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  5. Cz12g13180.t1

Cz12g13180.t1


Description : Reverse transcriptase, RNA-dependent DNA polymerase; gag-polypeptide of LTR copia-type; GAG-pre-integrase domain; Integrase, catalytic core; Zinc finger, CCHC-type [Interproscan].


Gene families : OG_01_0000023 (OrthoFinder) Phylogenetic Tree(s): OG0000023_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz12g13180.t1
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
Cz01g34170.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.04 OrthoFinder
Cz02g21030.t1 No alias gag-polypeptide of LTR copia-type; Zinc finger,... 0.2 OrthoFinder
Cz02g21050.t1 No alias gag-polypeptide of LTR copia-type [Interproscan]. 0.14 OrthoFinder
Cz02g21160.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.09 OrthoFinder
Cz02g21180.t1 No alias gag-polypeptide of LTR copia-type [Interproscan]. 0.08 OrthoFinder
Cz02g21230.t1 No alias Ribonuclease H domain [Interproscan]. 0.02 OrthoFinder
Cz02g21260.t1 No alias Hypothetical protein 0.09 OrthoFinder
Cz02g21270.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.14 OrthoFinder
Cz03g25140.t1 No alias Ribonuclease H domain [Interproscan]. 0.05 OrthoFinder
Cz05g10130.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.05 OrthoFinder
Cz12g13100.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.09 OrthoFinder
Cz12g13200.t1 No alias Hypothetical protein 0.05 OrthoFinder
Cz15g15050.t1 No alias gag-polypeptide of LTR copia-type [Interproscan]. 0.04 OrthoFinder
Cz17g17240.t1 No alias Hypothetical protein 0.05 OrthoFinder
UNPLg00551.t1 No alias Hypothetical protein 0.2 OrthoFinder
UNPLg00686.t1 No alias Hypothetical protein 0.33 OrthoFinder
UNPLg00762.t1 No alias Hypothetical protein 0.03 OrthoFinder
UNPLg00814.t1 No alias Hypothetical protein 0.33 OrthoFinder
UNPLg00888.t1 No alias Hypothetical protein 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR025724 GAG-pre-integrase_dom 451 512
IPR001878 Znf_CCHC 290 307
IPR001584 Integrase_cat-core 525 641
IPR013103 RVT_2 871 1112
No external refs found!