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  4. Sequence
  5. Cz12g13100.t1

Cz12g13100.t1


Description : Reverse transcriptase, RNA-dependent DNA polymerase; GAG-pre-integrase domain; Integrase, catalytic core [Interproscan].


Gene families : OG_01_0000023 (OrthoFinder) Phylogenetic Tree(s): OG0000023_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz12g13100.t1

Target Alias Description ECC score Gene Family Method Actions
Cz01g34080.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.04 OrthoFinder
Cz01g34090.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.03 OrthoFinder
Cz01g34150.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.11 OrthoFinder
Cz01g34170.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.08 OrthoFinder
Cz01g34200.t1 No alias gag-polypeptide of LTR copia-type; Zinc finger,... 0.03 OrthoFinder
Cz02g21030.t1 No alias gag-polypeptide of LTR copia-type; Zinc finger,... 0.06 OrthoFinder
Cz02g21050.t1 No alias gag-polypeptide of LTR copia-type [Interproscan]. 0.05 OrthoFinder
Cz02g21060.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.11 OrthoFinder
Cz02g21080.t1 No alias GAG-pre-integrase domain; Integrase, catalytic core... 0.03 OrthoFinder
Cz02g21170.t1 No alias Integrase, catalytic core [Interproscan]. 0.07 OrthoFinder
Cz02g21220.t1 No alias Integrase, catalytic core; Reverse transcriptase,... 0.11 OrthoFinder
Cz02g21230.t1 No alias Ribonuclease H domain [Interproscan]. 0.06 OrthoFinder
Cz03g25140.t1 No alias Ribonuclease H domain [Interproscan]. 0.08 OrthoFinder
Cz03g25170.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.06 OrthoFinder
Cz03g25180.t1 No alias Hypothetical protein 0.06 OrthoFinder
Cz03g25190.t1 No alias Hypothetical protein 0.03 OrthoFinder
Cz03g25200.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.11 OrthoFinder
Cz04g09130.t1 No alias Hypothetical protein 0.08 OrthoFinder
Cz12g13180.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.09 OrthoFinder
Cz14g04110.t1 No alias GAG-pre-integrase domain; Integrase, catalytic core... 0.11 OrthoFinder
Cz15g15060.t1 No alias Hypothetical protein 0.03 OrthoFinder
Cz16g05020.t1 No alias Hypothetical protein 0.03 OrthoFinder
Cz16g05080.t1 No alias gag-polypeptide of LTR copia-type; Zinc finger,... 0.03 OrthoFinder
Cz16g05110.t1 No alias Hypothetical protein 0.03 OrthoFinder
Cz17g17250.t1 No alias Hypothetical protein 0.07 OrthoFinder
UNPLg00551.t1 No alias Hypothetical protein 0.06 OrthoFinder
UNPLg00679.t1 No alias Hypothetical protein 0.03 OrthoFinder
UNPLg00686.t1 No alias Hypothetical protein 0.03 OrthoFinder
UNPLg00808.t1 No alias Hypothetical protein 0.08 OrthoFinder
UNPLg00814.t1 No alias Hypothetical protein 0.03 OrthoFinder
UNPLg00843.t1 No alias Hypothetical protein 0.03 OrthoFinder
UNPLg00866.t1 No alias Hypothetical protein 0.03 OrthoFinder
UNPLg00888.t1 No alias Hypothetical protein 0.07 OrthoFinder
UNPLg00911.t1 No alias Hypothetical protein 0.03 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499089.1_8042 KAA8499089 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499574.1_8527 KAA8499574 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.03 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499575.1_8528 KAA8499575 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499576.1_8529 KAA8499576 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.03 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495516.1_1514 KAA8495516 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.02 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494985.1_3515 KAA8494985 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.02 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493111.1_9412 KAA8493111 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.02 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493112.1_9413 KAA8493112 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.02 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492487.1_9180 KAA8492487 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.03 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492347.1_5530 KAA8492347 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.03 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491885.1_4893 KAA8491885 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.02 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491886.1_4894 KAA8491886 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.03 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491319.1_2320 KAA8491319 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.02 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491320.1_2321 KAA8491320 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.02 OrthoFinder
lcl|VRMN01000020.1_cds_KAA8490647.1_4689 KAA8490647 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.02 OrthoFinder
lcl|VRMN01000020.1_cds_KAA8490649.1_4691 KAA8490649 Hypothetical protein 0.03 OrthoFinder
lcl|VRMN01000025.1_cds_KAA8490485.1_2847 KAA8490485 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.02 OrthoFinder
lcl|VRMN01000025.1_cds_KAA8490487.1_2849 KAA8490487 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.02 OrthoFinder
lcl|VRMN01000031.1_cds_KAA8490359.1_5749 KAA8490359 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.02 OrthoFinder
lcl|VRMN01000031.1_cds_KAA8490368.1_5758 KAA8490368 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Enrichment
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 201 316
IPR013103 RVT_2 581 821
IPR025724 GAG-pre-integrase_dom 126 187
No external refs found!