Cz12g00030.t1

Description : Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain; Integrase zinc-binding domain; Integrase, catalytic core; Retroviral aspartyl protease; Reverse transcriptase domain [Interproscan].

Gene families : OG_01_0000060 (OrthoFinder) Phylogenetic Tree(s): OG0000060_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cz12g00030.t1
Cluster	HCCA: Cluster_75

Target	Alias	Description	ECC score	Gene Family Method	Actions
Cz04g07290.t1	No alias	Reverse transcriptase domain [Interproscan].	0.25	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001584	Integrase_cat-core	792	902
IPR041577	RT_RNaseH_2	494	592
IPR041588	Integrase_H2C2	717	772
IPR000477	RT_dom	271	425

External Links

No external refs found!

Cz12g00030.t1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation