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  5. Cz11g16130.t1

Cz11g16130.t1


Description : LSM domain, eukaryotic/archaea-type [Interproscan].


Gene families : OG_01_0000999 (OrthoFinder) Phylogenetic Tree(s): OG0000999_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz11g16130.t1
Cluster HCCA: Cluster_118

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020553.52 tig00020553_g10540.t1 RNA processing.RNA splicing.U6-associated LSm accessory... 0.02 OrthoFinder
Cpa|evm.model.tig00020614.84 tig00020614_g12199.t1 RNA processing.RNA splicing.U6-associated LSm accessory... 0.02 OrthoFinder
Cre02.g142850 30785856 RNA processing.RNA splicing.U6-associated LSm accessory... 0.04 OrthoFinder
Cre12.g538750 30791720, LSM1 RNA processing.RNA splicing.U6-associated LSm accessory... 0.02 OrthoFinder
OT_12G01680.1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.03 OrthoFinder
TP07G03950.1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
Vocar.0043s0043.1 32886948 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.04 OrthoFinder
Vocar.0054s0028.1 32894635 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
XM_003061100.1 MicpuC2_9210, 9210 Hypothetical protein 0.03 OrthoFinder
lcl|BLLF01002850.1_cds_GFH25567.1_20044 HaLaN_23552, GFH25567 U6 snRNA-associated Sm-like protein LSm8 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004298 threonine-type endopeptidase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
CC GO:0005741 mitochondrial outer membrane IEP Enrichment
CC GO:0005743 mitochondrial inner membrane IEP Enrichment
CC GO:0005839 proteasome core complex IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006405 RNA export from nucleus IEP Enrichment
BP GO:0006406 mRNA export from nucleus IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006473 protein acetylation IEP Enrichment
BP GO:0006475 internal protein amino acid acetylation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
BP GO:0016569 covalent chromatin modification IEP Enrichment
BP GO:0016570 histone modification IEP Enrichment
BP GO:0016573 histone acetylation IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
BP GO:0018205 peptidyl-lysine modification IEP Enrichment
BP GO:0018393 internal peptidyl-lysine acetylation IEP Enrichment
BP GO:0018394 peptidyl-lysine acetylation IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Enrichment
CC GO:0019866 organelle inner membrane IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
BP GO:0022900 electron transport chain IEP Enrichment
BP GO:0022904 respiratory electron transport chain IEP Enrichment
CC GO:0031090 organelle membrane IEP Enrichment
CC GO:0031248 protein acetyltransferase complex IEP Enrichment
CC GO:0031966 mitochondrial membrane IEP Enrichment
CC GO:0031968 organelle outer membrane IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043248 proteasome assembly IEP Enrichment
BP GO:0043543 protein acylation IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
BP GO:0050657 nucleic acid transport IEP Enrichment
BP GO:0050658 RNA transport IEP Enrichment
BP GO:0051028 mRNA transport IEP Enrichment
BP GO:0051168 nuclear export IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051236 establishment of RNA localization IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
CC GO:0061617 MICOS complex IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
MF GO:0070003 threonine-type peptidase activity IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
CC GO:0098798 mitochondrial protein-containing complex IEP Enrichment
CC GO:0098800 inner mitochondrial membrane protein complex IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
CC GO:1902493 acetyltransferase complex IEP Enrichment
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 2 64
No external refs found!