Cz11g12080.t1

Description : Ribosomal protein S19e [Interproscan].

Gene families : OG_01_0003297 (OrthoFinder) Phylogenetic Tree(s): OG0003297_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cz11g12080.t1
Cluster	HCCA: Cluster_16

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00021017.6	tig00021017_g17179.t1	Protein biosynthesis.cytosolic ribosome.small subunit...	0.12	OrthoFinder
Cre02.g106600	30784812, RPS19	Protein biosynthesis.cytosolic ribosome.small subunit...	0.18	OrthoFinder
Dusal.1308s00001.1	33194138	Ribosomal protein S19e [Interproscan].	0.04	OrthoFinder
EOD40848	No alias	Ribosomal protein S19e [Interproscan].	0.11	OrthoFinder
OT_11G02460.1	No alias	Ribosomal protein S19e [Interproscan].	0.11	OrthoFinder
PTI_13G03570.1	No alias	Ribosomal protein S19e [Interproscan].	0.2	OrthoFinder
Sro345_g122470.1	Contig2266.g18806	40S ribosomal protein S19	0.25	OrthoFinder
SymbC1.scaffold2373.2	2373.2	Ribosomal protein S19e [Interproscan].	0.02	OrthoFinder
TP05G07890.1	No alias	Ribosomal protein S19e [Interproscan].	0.18	OrthoFinder
Vocar.0006s0096.1	32894126	Ribosomal protein S19e [Interproscan].	0.1	OrthoFinder
XM_002509176.1	MICPUN_107171, 107171	Ribosomal protein S19e [Interproscan].	0.18	OrthoFinder
XM_003061489.1	MicpuC2_49693, 49693	Ribosomal protein S19e [Interproscan].	0.11	OrthoFinder
lcl\|BLLF01000010.1_cds_GFH05838.1_315	HaLaN_00368, GFH05838	Ribosomal protein S19e [Interproscan].	0.04	OrthoFinder
lcl\|BLLF01000010.1_cds_GFH05839.1_316	HaLaN_00369, GFH05839	40S ribosomal protein S19	0.02	OrthoFinder
lcl\|LHPG02000004.1_cds_PRW59438.1_7304	PRW59438	40S ribosomal S19-1	0.04	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8494467.1_2997	KAA8494467	40S ribosomal protein S19-1	0.14	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000105	histidine biosynthetic process	IEP	Enrichment
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
MF	GO:0003723	RNA binding	IEP	Enrichment
MF	GO:0003879	ATP phosphoribosyltransferase activity	IEP	Enrichment
MF	GO:0004520	endodeoxyribonuclease activity	IEP	Enrichment
MF	GO:0004531	deoxyribonuclease II activity	IEP	Enrichment
MF	GO:0004536	deoxyribonuclease activity	IEP	Enrichment
MF	GO:0004635	phosphoribosyl-AMP cyclohydrolase activity	IEP	Enrichment
BP	GO:0006520	cellular amino acid metabolic process	IEP	Enrichment
BP	GO:0006547	histidine metabolic process	IEP	Enrichment
MF	GO:0008097	5S rRNA binding	IEP	Enrichment
BP	GO:0008652	cellular amino acid biosynthetic process	IEP	Enrichment
MF	GO:0015035	protein-disulfide reductase activity	IEP	Enrichment
MF	GO:0015036	disulfide oxidoreductase activity	IEP	Enrichment
CC	GO:0015934	large ribosomal subunit	IEP	Enrichment
BP	GO:0016053	organic acid biosynthetic process	IEP	Enrichment
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	IEP	Enrichment
MF	GO:0016763	pentosyltransferase activity	IEP	Enrichment
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Enrichment
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	Enrichment
MF	GO:0016889	endodeoxyribonuclease activity, producing 3'-phosphomonoesters	IEP	Enrichment
MF	GO:0016894	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters	IEP	Enrichment
MF	GO:0019238	cyclohydrolase activity	IEP	Enrichment
MF	GO:0019843	rRNA binding	IEP	Enrichment
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Enrichment
BP	GO:0042254	ribosome biogenesis	IEP	Enrichment
BP	GO:0044085	cellular component biogenesis	IEP	Enrichment
BP	GO:0044283	small molecule biosynthetic process	IEP	Enrichment
CC	GO:0044391	ribosomal subunit	IEP	Enrichment
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001266	Ribosomal_S19e	9	144

External Links

No external refs found!

Cz11g12080.t1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation