- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : Pseudouridine synthase I, TruA, alpha/beta domain [Interproscan].
Gene families : OG_01_0001270 (OrthoFinder) Phylogenetic Tree(s): OG0001270_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cz11g12070.t1 | |
| Cluster | HCCA: Cluster_150 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cre03.g152950 | 30787527 | RNA processing.RNA... | 0.06 | OrthoFinder | |
| Cre16.g691900 | 30776864 | RNA processing.RNA... | 0.04 | OrthoFinder | |
| Dusal.0448s00005.1 | 33185729 | Pseudouridine synthase I, TruA, alpha/beta domain [Interproscan]. | 0.03 | OrthoFinder | |
| OT_16G02630.1 | No alias | Pseudouridine synthase I, TruA, alpha/beta domain [Interproscan]. | 0.02 | OrthoFinder | |
| OT_18G00720.1 | No alias | Pseudouridine synthase I, TruA, alpha/beta domain [Interproscan]. | 0.02 | OrthoFinder | |
| PTI_11G00610.1 | No alias | Pseudouridine synthase I, TruA, alpha/beta domain [Interproscan]. | 0.04 | OrthoFinder | |
| Sro83_g044530.1 | Contig4450.g33427 | Pseudouridine(27/28) synthase | 0.02 | OrthoFinder | |
| Vocar.0019s0103.1 | 32892839 | Hypothetical protein | 0.03 | OrthoFinder | |
| XM_003063687.1 | MicpuC2_3609, 3609 | Pseudouridine synthase I, TruA, alpha/beta domain [Interproscan]. | 0.03 | OrthoFinder | |
| lcl|VRMN01000003.1_cds_KAA8495254.1_1252 | KAA8495254 | TRNA pseudouridine synthase A, mitochondrial | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0001522 | pseudouridine synthesis | IEA | Interproscan |
| MF | GO:0003723 | RNA binding | IEA | Interproscan |
| BP | GO:0009451 | RNA modification | IEA | Interproscan |
| MF | GO:0009982 | pseudouridine synthase activity | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000105 | histidine biosynthetic process | IEP | Enrichment |
| MF | GO:0000166 | nucleotide binding | IEP | Enrichment |
| MF | GO:0003879 | ATP phosphoribosyltransferase activity | IEP | Enrichment |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Enrichment |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Enrichment |
| MF | GO:0005525 | GTP binding | IEP | Enrichment |
| CC | GO:0005634 | nucleus | IEP | Enrichment |
| CC | GO:0005732 | sno(s)RNA-containing ribonucleoprotein complex | IEP | Enrichment |
| CC | GO:0005737 | cytoplasm | IEP | Enrichment |
| BP | GO:0006351 | transcription, DNA-templated | IEP | Enrichment |
| BP | GO:0006364 | rRNA processing | IEP | Enrichment |
| BP | GO:0006396 | RNA processing | IEP | Enrichment |
| BP | GO:0006399 | tRNA metabolic process | IEP | Enrichment |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Enrichment |
| BP | GO:0006520 | cellular amino acid metabolic process | IEP | Enrichment |
| BP | GO:0006547 | histidine metabolic process | IEP | Enrichment |
| BP | GO:0016072 | rRNA metabolic process | IEP | Enrichment |
| MF | GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | IEP | Enrichment |
| MF | GO:0016763 | pentosyltransferase activity | IEP | Enrichment |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | Enrichment |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Enrichment |
| MF | GO:0017076 | purine nucleotide binding | IEP | Enrichment |
| MF | GO:0017150 | tRNA dihydrouridine synthase activity | IEP | Enrichment |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | Enrichment |
| MF | GO:0032553 | ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Enrichment |
| BP | GO:0032774 | RNA biosynthetic process | IEP | Enrichment |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Enrichment |
| CC | GO:0034457 | Mpp10 complex | IEP | Enrichment |
| BP | GO:0034470 | ncRNA processing | IEP | Enrichment |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Enrichment |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Enrichment |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Enrichment |
| MF | GO:0036094 | small molecule binding | IEP | Enrichment |
| BP | GO:0043038 | amino acid activation | IEP | Enrichment |
| BP | GO:0043039 | tRNA aminoacylation | IEP | Enrichment |
| MF | GO:0043168 | anion binding | IEP | Enrichment |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Enrichment |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Enrichment |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Enrichment |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | Enrichment |
| MF | GO:0097747 | RNA polymerase activity | IEP | Enrichment |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Enrichment |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Enrichment |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | Enrichment |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Enrichment |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR020097 | PsdUridine_synth_TruA_a/b_dom | 293 | 399 |
| No external refs found! |