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  5. Cpa|evm.model.tig00001073.18

Cpa|evm.model.tig00001073.18 (tig00001073_g6826.t1)


Aliases : tig00001073_g6826.t1

Description : Chromatin organisation.histone modifications.histone lysine methylation/demethylation.class II/ASH1 histone methyltransferase component


Gene families : OG_01_0000051 (OrthoFinder) Phylogenetic Tree(s): OG0000051_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001073.18
Cluster HCCA: Cluster_154

Target Alias Description ECC score Gene Family Method Actions
Cre03.g197700 30788134 Histone-lysine N-methyltransferase TRX1 OS=Oryza sativa... 0.01 OrthoFinder
PTI_22G01600.1 No alias SET domain; PWWP domain; Zinc finger, PHD-finger;... 0.02 OrthoFinder
Sro59_g034120.1 Contig571.g7258 Lysine N-methyltransferase, H3 lysine-4 specific 0.01 OrthoFinder
Transcript_contig_54729 54729 SET domain; Pre-SET CXC domain [Interproscan]. 0.02 OrthoFinder
Transcript_contig_78818 78818 PHD-finger; SAND domain; PHD-zinc-finger like domain... 0.02 OrthoFinder
Vocar.0021s0176.1 32895868 SET domain; AWS domain; PWWP domain [Interproscan]. 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004180 carboxypeptidase activity IEP Enrichment
MF GO:0004181 metallocarboxypeptidase activity IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008235 metalloexopeptidase activity IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001214 SET_dom 396 501
IPR006560 AWS_dom 348 381
IPR018866 Znf-4CXXC_R1 747 803
No external refs found!