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  5. Cz11g06080.t1

Cz11g06080.t1


Description : 60S ribosomal protein L6E [Interproscan].


Gene families : OG_01_0002935 (OrthoFinder) Phylogenetic Tree(s): OG0002935_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz11g06080.t1
Cluster HCCA: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021127.127 tig00021127_g18807.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 OrthoFinder
Cre01.g011000 30788989, RPL6 Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 OrthoFinder
Dusal.0521s00006.1 33197395 60S ribosomal protein L6E [Interproscan]. 0.21 OrthoFinder
OT_09G04060.1 No alias 60S ribosomal protein L6E [Interproscan]. 0.15 OrthoFinder
PTI_04G05480.1 No alias 60S ribosomal protein L6E [Interproscan]. 0.23 OrthoFinder
Sro189_g081570.1 Contig744.g8521 60S ribosomal protein L6 0.29 OrthoFinder
Sro68_g038220.1 Contig2027.g17403 60S ribosomal protein L6 0.24 OrthoFinder
SymbC1.scaffold2305.2 2305.2 60S ribosomal protein L6E [Interproscan]. 0.07 OrthoFinder
SymbC1.scaffold819.2 819.2 60S ribosomal protein L6E [Interproscan]. 0.01 OrthoFinder
Vocar.0013s0019.1 32896343 60S ribosomal protein L6E [Interproscan]. 0.06 OrthoFinder
XM_002504012.1 MICPUN_108678, 108678 60S ribosomal protein L6E [Interproscan]. 0.18 OrthoFinder
XM_003059548.1 MicpuC2_49628, 49628 60S ribosomal protein L6E [Interproscan]. 0.13 OrthoFinder
lcl|BLLF01001177.1_cds_GFH17624.1_12101 HaLaN_14295, GFH17624 Component of cytosolic 80S ribosome and 60S large subunit 0.02 OrthoFinder
lcl|LHPG02000006.1_cds_PRW57743.1_8428 PRW57743 60S ribosomal L6 0.1 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495926.1_1924 KAA8495926 60S ribosomal protein L6 0.17 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004017 adenylate kinase activity IEP Enrichment
CC GO:0005759 mitochondrial matrix IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
CC GO:0016272 prefoldin complex IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Enrichment
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Enrichment
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Enrichment
MF GO:0019205 nucleobase-containing compound kinase activity IEP Enrichment
CC GO:0031974 membrane-enclosed lumen IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0033897 ribonuclease T2 activity IEP Enrichment
CC GO:0043233 organelle lumen IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0050145 nucleoside monophosphate kinase activity IEP Enrichment
CC GO:0070013 intracellular organelle lumen IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR000915 60S_ribosomal_L6E 117 222
No external refs found!