Cz11g01040.t1

Description : Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain; Reverse transcriptase domain; Integrase zinc-binding domain; Integrase, catalytic core [Interproscan].

Gene families : OG_01_0000060 (OrthoFinder) Phylogenetic Tree(s): OG0000060_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cz11g01040.t1
Cluster	HCCA: Cluster_75

Target	Alias	Description	ECC score	Gene Family Method
Cz02g03020.t1	No alias	Reverse transcriptase/retrotransposon-derived protein,...	0.08	OrthoFinder
Cz02g27010.t1	No alias	Reverse transcriptase/retrotransposon-derived protein,...	0.06	OrthoFinder
Cz04g31300.t1	No alias	Chromo domain [Interproscan].	0.08	OrthoFinder
Cz04g31310.t1	No alias	Integrase, catalytic core [Interproscan].	0.04	OrthoFinder
Cz06g22260.t1	No alias	Hypothetical protein	0.08	OrthoFinder
Cz07g15230.t1	No alias	Chromo domain [Interproscan].	0.04	OrthoFinder
Cz09g23090.t1	No alias	Integrase zinc-binding domain; Integrase, catalytic...	0.05	OrthoFinder
Cz09g23160.t1	No alias	Integrase zinc-binding domain; Integrase, catalytic...	0.07	OrthoFinder
Cz13g09240.t1	No alias	Retroviral aspartyl protease [Interproscan].	0.04	OrthoFinder
Cz19g08080.t1	No alias	Retroviral aspartyl protease [Interproscan].	0.05	OrthoFinder
Cz19g08090.t1	No alias	Integrase, catalytic core; Reverse transcriptase domain;...	0.04	OrthoFinder
TP07G04220.1	No alias	Reverse transcriptase domain; Reverse...	0.02	OrthoFinder
UNPLg00342.t1	No alias	Hypothetical protein	0.05	OrthoFinder
lcl\|BLLF01001218.1_cds_GFH17889.1_12366	HaLaN_14611, GFH17889	Reverse transcriptase, RNase H-like domain; Reverse...	0.03	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8498172.1_7125	KAA8498172	Transposon Ty3-G Gag-Pol polyprotein	0.04	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8499396.1_8349	KAA8499396	Transposon Ty3-G Gag-Pol polyprotein	0.05	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8500031.1_8984	KAA8500031	Transposon Tf2-6 polyprotein	0.04	OrthoFinder
lcl\|VRMN01000002.1_cds_KAA8496807.1_536	KAA8496807	Transposon Ty3-I Gag-Pol polyprotein	0.03	OrthoFinder
lcl\|VRMN01000003.1_cds_KAA8495847.1_1845	KAA8495847	Transposon Ty3-G Gag-Pol polyprotein	0.05	OrthoFinder
lcl\|VRMN01000003.1_cds_KAA8496123.1_2121	KAA8496123	Transposon Ty3-I Gag-Pol polyprotein	0.03	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8494421.1_2951	KAA8494421	Transposon Ty3-I Gag-Pol polyprotein	0.07	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8494620.1_3150	KAA8494620	Transposon Ty3-I Gag-Pol polyprotein	0.03	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8495183.1_3713	KAA8495183	Transposon Ty3-I Gag-Pol polyprotein	0.05	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8495185.1_3715	KAA8495185	Transposon Ty3-I Gag-Pol polyprotein	0.04	OrthoFinder
lcl\|VRMN01000005.1_cds_KAA8494005.1_3869	KAA8494005	Transposon Ty3-I Gag-Pol polyprotein	0.03	OrthoFinder
lcl\|VRMN01000005.1_cds_KAA8494327.1_4191	KAA8494327	Transposon Ty3-G Gag-Pol polyprotein	0.04	OrthoFinder
lcl\|VRMN01000007.1_cds_KAA8493427.1_9728	KAA8493427	Integrase, catalytic core [Interproscan].	0.04	OrthoFinder
lcl\|VRMN01000008.1_cds_KAA8492973.1_2709	KAA8492973	Transposon Ty3-G Gag-Pol polyprotein	0.04	OrthoFinder
lcl\|VRMN01000012.1_cds_KAA8491610.1_5078	KAA8491610	Retrovirus-related Pol polyprotein from transposon	0.04	OrthoFinder
lcl\|VRMN01000012.1_cds_KAA8491611.1_5079	KAA8491611	Retrovirus-related Pol polyprotein from transposon 17.6	0.04	OrthoFinder
lcl\|VRMN01000014.1_cds_KAA8491326.1_2327	KAA8491326	Transposon Ty3-I Gag-Pol polyprotein	0.03	OrthoFinder
lcl\|VRMN01000015.1_cds_KAA8491220.1_5848	KAA8491220	Hypothetical protein	0.03	OrthoFinder
lcl\|VRMN01000016.1_cds_KAA8491010.1_9767	KAA8491010	Hypothetical protein	0.03	OrthoFinder
lcl\|VRMN01000018.1_cds_KAA8490790.1_5562	KAA8490790	Transposon Ty3-I Gag-Pol polyprotein	0.05	OrthoFinder
lcl\|VRMN01000019.1_cds_KAA8490785.1_6041	KAA8490785	Transposon Ty3-G Gag-Pol polyprotein	0.05	OrthoFinder
lcl\|VRMN01000023.1_cds_KAA8490537.1_5903	KAA8490537	Transposon Ty3-G Gag-Pol polyprotein	0.05	OrthoFinder
lcl\|VRMN01000023.1_cds_KAA8490538.1_5904	KAA8490538	Transposon Ty3-I Gag-Pol polyprotein	0.04	OrthoFinder
lcl\|VRMN01000026.1_cds_KAA8490463.1_6409	KAA8490463	Transposon Ty3-G Gag-Pol polyprotein	0.03	OrthoFinder
lcl\|VRMN01000041.1_cds_KAA8490242.1_5206	KAA8490242	Transposon Ty3-I Gag-Pol polyprotein	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	Enrichment
BP	GO:0042221	response to chemical	IEP	Enrichment
BP	GO:0046677	response to antibiotic	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR041577	RT_RNaseH_2	464	562
IPR001584	Integrase_cat-core	762	872
IPR041588	Integrase_H2C2	687	742
IPR000477	RT_dom	241	399

External Links

No external refs found!

Cz11g01040.t1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation