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  5. Cz10g21050.t1

Cz10g21050.t1


Description : Ribosomal protein S3Ae [Interproscan].


Gene families : OG_01_0002820 (OrthoFinder) Phylogenetic Tree(s): OG0002820_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz10g21050.t1
Cluster HCCA: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020710.39 tig00020710_g13273.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.24 OrthoFinder
Cre13.g568650 30784327, RPS3a Protein biosynthesis.cytosolic ribosome.small subunit... 0.2 OrthoFinder
Dusal.0093s00008.1 33185336 Ribosomal protein S3Ae [Interproscan]. 0.21 OrthoFinder
EOD08172 No alias Ribosomal protein S3Ae [Interproscan]. 0.15 OrthoFinder
EOD18963 No alias Ribosomal protein S3Ae [Interproscan]. 0.21 OrthoFinder
OT_20G00130.1 No alias Ribosomal protein S3Ae [Interproscan]. 0.24 OrthoFinder
PTI_01G05430.1 No alias Ribosomal protein S3Ae [Interproscan]. 0.34 OrthoFinder
Sro174_g076500.1 Contig4298.g32434 40S ribosomal protein S1 0.37 OrthoFinder
Sro920_g220290.1 Contig2508.g20529 40S ribosomal protein S1 0.31 OrthoFinder
SymbC1.scaffold7952.3 7952.3 Ribosomal protein S3Ae [Interproscan]. 0.04 OrthoFinder
TP20G01320.1 No alias Ribosomal protein S3Ae [Interproscan]. 0.37 OrthoFinder
Vocar.0001s0280.1 32885113 Ribosomal protein S3Ae [Interproscan]. 0.08 OrthoFinder
XM_002505213.1 MICPUN_95475, 95475 Ribosomal protein S3Ae [Interproscan]. 0.26 OrthoFinder
XM_003060312.1 MicpuC2_49648, 49648 Ribosomal protein S3Ae [Interproscan]. 0.12 OrthoFinder
lcl|LHPG02000014.1_cds_PRW39385.1_2562 PRW39385 40S ribosomal S3a-2 isoform A 0.19 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498213.1_7166 KAA8498213 40S ribosomal protein S3a 0.18 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004635 phosphoribosyl-AMP cyclohydrolase activity IEP Enrichment
BP GO:0006547 histidine metabolic process IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0015035 protein-disulfide reductase activity IEP Enrichment
MF GO:0015036 disulfide oxidoreductase activity IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Enrichment
MF GO:0019238 cyclohydrolase activity IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
InterPro domains Description Start Stop
IPR001593 Ribosomal_S3Ae 6 172
No external refs found!