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  5. Cz10g14330.t1

Cz10g14330.t1


Description : Helicase, C-terminal; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0002251 (OrthoFinder) Phylogenetic Tree(s): OG0002251_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz10g14330.t1
Cluster HCCA: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021346.2 tig00021346_g20372.t1 DEAD-box ATP-dependent RNA helicase 47B OS=Oryza sativa... 0.01 OrthoFinder
Cre07.g349300 30774622 DEAD-box ATP-dependent RNA helicase 47, mitochondrial... 0.04 OrthoFinder
Dusal.0178s00006.1 33194016 DEAD/DEAH box helicase domain [Interproscan]. 0.02 OrthoFinder
OT_07G02410.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.06 OrthoFinder
TP16G01210.1 No alias DEAD/DEAH box helicase domain [Interproscan]. 0.02 OrthoFinder
XM_002499572.1 MICPUN_67266, 67266 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.05 OrthoFinder
XM_003058161.1 MicpuC2_2115, 2115 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
lcl|LHPG02000010.1_cds_PRW51077.1_1015 PRW51077 DEAD-box ATP-dependent RNA helicase mitochondrial 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006547 histidine metabolic process IEP Enrichment
BP GO:0006553 lysine metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0008652 cellular amino acid biosynthetic process IEP Enrichment
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP Enrichment
BP GO:0009066 aspartate family amino acid metabolic process IEP Enrichment
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Enrichment
BP GO:0009085 lysine biosynthetic process IEP Enrichment
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0009452 7-methylguanosine RNA capping IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0016053 organic acid biosynthetic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
BP GO:0030488 tRNA methylation IEP Enrichment
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
CC GO:0034708 methyltransferase complex IEP Enrichment
BP GO:0036260 RNA capping IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
CC GO:0043527 tRNA methyltransferase complex IEP Enrichment
BP GO:0043648 dicarboxylic acid metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:0046394 carboxylic acid biosynthetic process IEP Enrichment
BP GO:0046451 diaminopimelate metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 561 660
IPR011545 DEAD/DEAH_box_helicase_dom 222 461
No external refs found!