Cz10g06220.t1

Description : Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain; Integrase zinc-binding domain; Integrase, catalytic core; Retroviral aspartyl protease; Reverse transcriptase domain [Interproscan].

Gene families : OG_01_0000060 (OrthoFinder) Phylogenetic Tree(s): OG0000060_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cz10g06220.t1
Cluster	HCCA: Cluster_35

Target	Alias	Description	ECC score	Gene Family Method
Cz03g14150.t1	No alias	Integrase zinc-binding domain; Integrase, catalytic...	0.03	OrthoFinder
Cz04g07260.t1	No alias	Hypothetical protein	0.04	OrthoFinder
Cz06g22260.t1	No alias	Hypothetical protein	0.04	OrthoFinder
Cz07g15240.t1	No alias	Reverse transcriptase/retrotransposon-derived protein,...	0.05	OrthoFinder
Cz09g23160.t1	No alias	Integrase zinc-binding domain; Integrase, catalytic...	0.03	OrthoFinder
Cz09g24160.t1	No alias	Retroviral aspartyl protease; Reverse transcriptase...	0.04	OrthoFinder
Cz09g24190.t1	No alias	Hypothetical protein	0.04	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8499396.1_8349	KAA8499396	Transposon Ty3-G Gag-Pol polyprotein	0.03	OrthoFinder
lcl\|VRMN01000003.1_cds_KAA8495847.1_1845	KAA8495847	Transposon Ty3-G Gag-Pol polyprotein	0.03	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8494421.1_2951	KAA8494421	Transposon Ty3-I Gag-Pol polyprotein	0.03	OrthoFinder
lcl\|VRMN01000019.1_cds_KAA8490785.1_6041	KAA8490785	Transposon Ty3-G Gag-Pol polyprotein	0.03	OrthoFinder
lcl\|VRMN01000023.1_cds_KAA8490537.1_5903	KAA8490537	Transposon Ty3-G Gag-Pol polyprotein	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004857	enzyme inhibitor activity	IEP	Enrichment
MF	GO:0004866	endopeptidase inhibitor activity	IEP	Enrichment
MF	GO:0004867	serine-type endopeptidase inhibitor activity	IEP	Enrichment
BP	GO:0016579	protein deubiquitination	IEP	Enrichment
MF	GO:0030234	enzyme regulator activity	IEP	Enrichment
MF	GO:0030414	peptidase inhibitor activity	IEP	Enrichment
MF	GO:0061134	peptidase regulator activity	IEP	Enrichment
MF	GO:0061135	endopeptidase regulator activity	IEP	Enrichment
BP	GO:0070646	protein modification by small protein removal	IEP	Enrichment
MF	GO:0098772	molecular function regulator	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR041588	Integrase_H2C2	741	795
IPR000477	RT_dom	295	453
IPR041577	RT_RNaseH_2	518	616
IPR001584	Integrase_cat-core	816	926

External Links

No external refs found!

Cz10g06220.t1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation