Cz10g04070.t1


Description : RNA recognition motif domain [Interproscan].


Gene families : OG_01_0003296 (OrthoFinder) Phylogenetic Tree(s): OG0003296_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz10g04070.t1
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000144.75 tig00000144_g9066.t1 No description available 0.03 OrthoFinder
Cre02.g104650 30785421 No description available 0.07 OrthoFinder
OT_10G02900.1 No alias RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
PTI_23G00340.1 No alias RNA recognition motif domain [Interproscan]. 0.05 OrthoFinder
Sro251_g099260.1 Contig687.g8006 RNA-binding protein 28 0.02 OrthoFinder
Transcript_contig_57849 57849 RNA recognition motif domain [Interproscan]. 0.04 OrthoFinder
Vocar.0020s0164.1 32886730 RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
XM_002503386.1 MICPUN_101277, 101277 RNA recognition motif domain [Interproscan]. 0.06 OrthoFinder
lcl|BLLF01000077.1_cds_GFH07148.1_1625 HaLaN_01909, GFH07148 Hypothetical protein 0.03 OrthoFinder
lcl|BLLF01000077.1_cds_GFH07149.1_1626 HaLaN_01910, GFH07149 RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57348.1_8998 PRW57348 RNA-binding 28 isoform B 0.05 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57349.1_8999 PRW57349 RNA-binding 28 isoform A 0.05 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493286.1_9587 KAA8493286 RNA-binding protein 28 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
CC GO:0034457 Mpp10 complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 723 800
IPR000504 RRM_dom 11 81
IPR000504 RRM_dom 565 624
IPR000504 RRM_dom 314 382
No external refs found!