Cz09g23090.t1

Description : Integrase zinc-binding domain; Integrase, catalytic core; Retroviral aspartyl protease; Reverse transcriptase domain; Reverse transcriptase, RNase H-like domain [Interproscan].

Gene families : OG_01_0000060 (OrthoFinder) Phylogenetic Tree(s): OG0000060_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cz09g23090.t1
Cluster	HCCA: Cluster_31

Target	Alias	Description	ECC score	Gene Family Method
Cz03g14150.t1	No alias	Integrase zinc-binding domain; Integrase, catalytic...	0.02	OrthoFinder
Cz03g28140.t1	No alias	Reverse transcriptase domain; Integrase zinc-binding...	0.03	OrthoFinder
Cz03g40130.t1	No alias	Reverse transcriptase/retrotransposon-derived protein,...	0.09	OrthoFinder
Cz03g40140.t1	No alias	Chromo domain; Integrase, catalytic core [Interproscan].	0.05	OrthoFinder
Cz04g07280.t1	No alias	Retroviral aspartyl protease [Interproscan].	0.02	OrthoFinder
Cz04g31300.t1	No alias	Chromo domain [Interproscan].	0.02	OrthoFinder
Cz04g31310.t1	No alias	Integrase, catalytic core [Interproscan].	0.05	OrthoFinder
Cz05g14160.t1	No alias	Retroviral aspartyl protease; Retrotransposon gag...	0.05	OrthoFinder
Cz06g10270.t1	No alias	Reverse transcriptase/retrotransposon-derived protein,...	0.04	OrthoFinder
Cz06g11150.t1	No alias	Reverse transcriptase, RNase H-like domain; Integrase...	0.08	OrthoFinder
Cz06g22260.t1	No alias	Hypothetical protein	0.02	OrthoFinder
Cz07g15230.t1	No alias	Chromo domain [Interproscan].	0.06	OrthoFinder
Cz09g23160.t1	No alias	Integrase zinc-binding domain; Integrase, catalytic...	0.04	OrthoFinder
Cz11g01040.t1	No alias	Reverse transcriptase/retrotransposon-derived protein,...	0.05	OrthoFinder
Cz15g18080.t1	No alias	Chromo domain [Interproscan].	0.05	OrthoFinder
UNPLg00342.t1	No alias	Hypothetical protein	0.03	OrthoFinder
lcl\|BLLF01001218.1_cds_GFH17889.1_12366	HaLaN_14611, GFH17889	Reverse transcriptase, RNase H-like domain; Reverse...	0.02	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8498172.1_7125	KAA8498172	Transposon Ty3-G Gag-Pol polyprotein	0.02	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8499396.1_8349	KAA8499396	Transposon Ty3-G Gag-Pol polyprotein	0.02	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8500031.1_8984	KAA8500031	Transposon Tf2-6 polyprotein	0.02	OrthoFinder
lcl\|VRMN01000002.1_cds_KAA8496807.1_536	KAA8496807	Transposon Ty3-I Gag-Pol polyprotein	0.02	OrthoFinder
lcl\|VRMN01000003.1_cds_KAA8495847.1_1845	KAA8495847	Transposon Ty3-G Gag-Pol polyprotein	0.02	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8494421.1_2951	KAA8494421	Transposon Ty3-I Gag-Pol polyprotein	0.02	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8495183.1_3713	KAA8495183	Transposon Ty3-I Gag-Pol polyprotein	0.02	OrthoFinder
lcl\|VRMN01000005.1_cds_KAA8494327.1_4191	KAA8494327	Transposon Ty3-G Gag-Pol polyprotein	0.02	OrthoFinder
lcl\|VRMN01000007.1_cds_KAA8493427.1_9728	KAA8493427	Integrase, catalytic core [Interproscan].	0.02	OrthoFinder
lcl\|VRMN01000008.1_cds_KAA8492973.1_2709	KAA8492973	Transposon Ty3-G Gag-Pol polyprotein	0.02	OrthoFinder
lcl\|VRMN01000012.1_cds_KAA8491610.1_5078	KAA8491610	Retrovirus-related Pol polyprotein from transposon	0.02	OrthoFinder
lcl\|VRMN01000012.1_cds_KAA8491611.1_5079	KAA8491611	Retrovirus-related Pol polyprotein from transposon 17.6	0.02	OrthoFinder
lcl\|VRMN01000014.1_cds_KAA8491326.1_2327	KAA8491326	Transposon Ty3-I Gag-Pol polyprotein	0.02	OrthoFinder
lcl\|VRMN01000019.1_cds_KAA8490785.1_6041	KAA8490785	Transposon Ty3-G Gag-Pol polyprotein	0.02	OrthoFinder
lcl\|VRMN01000023.1_cds_KAA8490537.1_5903	KAA8490537	Transposon Ty3-G Gag-Pol polyprotein	0.02	OrthoFinder
lcl\|VRMN01000026.1_cds_KAA8490463.1_6409	KAA8490463	Transposon Ty3-G Gag-Pol polyprotein	0.02	OrthoFinder
lcl\|VRMN01000041.1_cds_KAA8490242.1_5206	KAA8490242	Transposon Ty3-I Gag-Pol polyprotein	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0009262	deoxyribonucleotide metabolic process	IEP	Enrichment
BP	GO:0009263	deoxyribonucleotide biosynthetic process	IEP	Enrichment
MF	GO:0016715	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR041588	Integrase_H2C2	709	763
IPR000477	RT_dom	266	426
IPR041373	RT_RNaseH	515	616
IPR001584	Integrase_cat-core	795	906

External Links

No external refs found!

Cz09g23090.t1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation