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Description : Regulator of chromosome condensation, RCC1 [Interproscan].
Gene families : OG_01_0000020 (OrthoFinder) Phylogenetic Tree(s): OG0000020_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cz09g20160.t1 | |
| Cluster | HCCA: Cluster_62 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00020938.2 | tig00020938_g16128.t1 | Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana | 0.02 | OrthoFinder | |
| Cpa|evm.model.tig00021352.24 | tig00021352_g20694.t1 | Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana | 0.02 | OrthoFinder | |
| Cre12.g528350 | 30791846 | Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana | 0.03 | OrthoFinder | |
| Dusal.0731s00006.1 | 33195668 | Regulator of chromosome condensation, RCC1; Regulator of... | 0.02 | OrthoFinder | |
| EOD08802 | No alias | Regulator of chromosome condensation, RCC1 [Interproscan]. | 0.02 | OrthoFinder | |
| EOD12960 | No alias | Regulator of chromosome condensation (RCC1) repeat;... | 0.03 | OrthoFinder | |
| PTI_17G02630.1 | No alias | Regulator of chromosome condensation, RCC1; BTB/POZ... | 0.02 | OrthoFinder | |
| PTI_27G00520.1 | No alias | Regulator of chromosome condensation, RCC1 [Interproscan]. | 0.04 | OrthoFinder | |
| SymbC1.scaffold3997.3 | 3997.3 | Regulator of chromosome condensation, RCC1 [Interproscan]. | 0.02 | OrthoFinder | |
| Transcript_contig_2579 | 2579 | Regulator of chromosome condensation, RCC1 [Interproscan]. | 0.03 | OrthoFinder | |
| Transcript_contig_58480 | 58480 | Regulator of chromosome condensation, RCC1 [Interproscan]. | 0.03 | OrthoFinder | |
| Transcript_contig_79616 | 79616 | Regulator of chromosome condensation, RCC1 [Interproscan]. | 0.02 | OrthoFinder | |
| Vocar.0017s0213.1 | 32891365 | Regulator of chromosome condensation, RCC1 [Interproscan]. | 0.03 | OrthoFinder | |
| XM_002506984.1 | MICPUN_96161, 96161 | Regulator of chromosome condensation, RCC1 [Interproscan]. | 0.02 | OrthoFinder | |
| XM_003054727.1 | MicpuC2_46092, 46092 | Regulator of chromosome condensation, RCC1 [Interproscan]. | 0.01 | OrthoFinder | |
| XM_003058490.1 | MicpuC2_17539, 17539 | Regulator of chromosome condensation, RCC1 [Interproscan]. | 0.02 | OrthoFinder | |
| XM_003062733.1 | MicpuC2_42406, 42406 | Regulator of chromosome condensation, RCC1 [Interproscan]. | 0.02 | OrthoFinder | |
| lcl|LHPG02000028.1_cds_PRW05842.1_6009 | PRW05842 | Ultraviolet-B receptor UVR8 | 0.03 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Enrichment |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Enrichment |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Enrichment |
| MF | GO:0001671 | ATPase activator activity | IEP | Enrichment |
| MF | GO:0005488 | binding | IEP | Enrichment |
| MF | GO:0005515 | protein binding | IEP | Enrichment |
| MF | GO:0005543 | phospholipid binding | IEP | Enrichment |
| CC | GO:0005667 | transcription regulator complex | IEP | Enrichment |
| CC | GO:0005669 | transcription factor TFIID complex | IEP | Enrichment |
| CC | GO:0005681 | spliceosomal complex | IEP | Enrichment |
| BP | GO:0006396 | RNA processing | IEP | Enrichment |
| BP | GO:0006397 | mRNA processing | IEP | Enrichment |
| BP | GO:0006413 | translational initiation | IEP | Enrichment |
| MF | GO:0008047 | enzyme activator activity | IEP | Enrichment |
| MF | GO:0008289 | lipid binding | IEP | Enrichment |
| BP | GO:0008380 | RNA splicing | IEP | Enrichment |
| BP | GO:0016070 | RNA metabolic process | IEP | Enrichment |
| BP | GO:0016071 | mRNA metabolic process | IEP | Enrichment |
| MF | GO:0019899 | enzyme binding | IEP | Enrichment |
| MF | GO:0031072 | heat shock protein binding | IEP | Enrichment |
| MF | GO:0031625 | ubiquitin protein ligase binding | IEP | Enrichment |
| MF | GO:0035091 | phosphatidylinositol binding | IEP | Enrichment |
| MF | GO:0044389 | ubiquitin-like protein ligase binding | IEP | Enrichment |
| MF | GO:0051087 | chaperone binding | IEP | Enrichment |
| MF | GO:0060590 | ATPase regulator activity | IEP | Enrichment |
| MF | GO:0070403 | NAD+ binding | IEP | Enrichment |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
| CC | GO:0090575 | RNA polymerase II transcription regulator complex | IEP | Enrichment |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | Enrichment |
| No external refs found! |