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Description : Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan].
Gene families : OG_01_0002711 (OrthoFinder) Phylogenetic Tree(s): OG0002711_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cz09g18090.t1 | |
| Cluster | HCCA: Cluster_80 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00020903.34 | tig00020903_g15101.t1 | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.37 | OrthoFinder | |
| Cre04.g214503 | 30791056 | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.38 | OrthoFinder | |
| Dusal.0081s00006.1 | 33198226 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. | 0.12 | OrthoFinder | |
| EOD10673 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. | 0.13 | OrthoFinder | |
| OT_06G01150.1 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. | 0.12 | OrthoFinder | |
| PTI_01G03990.1 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. | 0.06 | OrthoFinder | |
| Sro1183_g250060.1 | Contig238.g2905 | 40S ribosomal protein S12 | 0.21 | OrthoFinder | |
| SymbC1.scaffold1958.6 | 1958.6 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. | 0.04 | OrthoFinder | |
| SymbC1.scaffold6531.2 | 6531.2 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. | 0.03 | OrthoFinder | |
| Vocar.0025s0148.1 | 32898334 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. | 0.04 | OrthoFinder | |
| XM_002501789.1 | MICPUN_80940, 80940 | Growth arrest and dna-damage-inducible protein 45 alpha | 0.07 | OrthoFinder | |
| XM_003059134.1 | MicpuC2_49622, 49622 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. | 0.14 | OrthoFinder | |
| lcl|BLLF01002587.1_cds_GFH24621.1_19098 | HaLaN_22450, GFH24621 | 40S ribosomal protein S12 | 0.06 | OrthoFinder | |
| lcl|LHPG02000011.1_cds_PRW45727.1_1336 | PRW45727 | 40S ribosomal S12-like | 0.08 | OrthoFinder | |
| lcl|VRMN01000001.1_cds_KAA8497927.1_6880 | KAA8497927 | 40S ribosomal protein S12 | 0.15 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | Enrichment |
| MF | GO:0003723 | RNA binding | IEP | Enrichment |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Enrichment |
| MF | GO:0005198 | structural molecule activity | IEP | Enrichment |
| CC | GO:0005575 | cellular_component | IEP | Enrichment |
| CC | GO:0005840 | ribosome | IEP | Enrichment |
| BP | GO:0006412 | translation | IEP | Enrichment |
| BP | GO:0006518 | peptide metabolic process | IEP | Enrichment |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0008150 | biological_process | IEP | Enrichment |
| BP | GO:0008152 | metabolic process | IEP | Enrichment |
| BP | GO:0009058 | biosynthetic process | IEP | Enrichment |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0009987 | cellular process | IEP | Enrichment |
| CC | GO:0015934 | large ribosomal subunit | IEP | Enrichment |
| CC | GO:0016272 | prefoldin complex | IEP | Enrichment |
| MF | GO:0016742 | hydroxymethyl-, formyl- and related transferase activity | IEP | Enrichment |
| BP | GO:0019538 | protein metabolic process | IEP | Enrichment |
| MF | GO:0019843 | rRNA binding | IEP | Enrichment |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Enrichment |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0042254 | ribosome biogenesis | IEP | Enrichment |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Enrichment |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Enrichment |
| CC | GO:0043226 | organelle | IEP | Enrichment |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Enrichment |
| CC | GO:0043229 | intracellular organelle | IEP | Enrichment |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Enrichment |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Enrichment |
| BP | GO:0043604 | amide biosynthetic process | IEP | Enrichment |
| BP | GO:0044085 | cellular component biogenesis | IEP | Enrichment |
| BP | GO:0044237 | cellular metabolic process | IEP | Enrichment |
| BP | GO:0044238 | primary metabolic process | IEP | Enrichment |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Enrichment |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Enrichment |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Enrichment |
| CC | GO:0044391 | ribosomal subunit | IEP | Enrichment |
| BP | GO:0071704 | organic substance metabolic process | IEP | Enrichment |
| CC | GO:0110165 | cellular anatomical entity | IEP | Enrichment |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Enrichment |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR004038 | Ribosomal_L7Ae/L30e/S12e/Gad45 | 30 | 123 |
| No external refs found! |