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Description : Mono-functional DNA-alkylating methyl methanesulfonate N-term; Cleavage/polyadenylation specificity factor, A subunit, C-terminal [Interproscan].
Gene families : OG_01_0001824 (OrthoFinder) Phylogenetic Tree(s): OG0001824_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cz09g16050.t1 | |
| Cluster | HCCA: Cluster_82 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Dusal.0002s00041.1 | 33187968 | Hypothetical protein | 0.02 | OrthoFinder | |
| OT_07G00440.1 | No alias | Mono-functional DNA-alkylating methyl methanesulfonate... | 0.02 | OrthoFinder | |
| PTI_01G04480.1 | No alias | Hypothetical protein | 0.03 | OrthoFinder | |
| PTI_01G04490.1 | No alias | Cleavage/polyadenylation specificity factor, A subunit,... | 0.02 | OrthoFinder | |
| Sro151_g069100.1 | Contig294.g3836 | And polyadenylation specificity factor subunit 1 | 0.03 | OrthoFinder | |
| TP04G04210.1 | No alias | Cleavage/polyadenylation specificity factor, A subunit,... | 0.02 | OrthoFinder | |
| Transcript_contig_1221 | 1221 | Mono-functional DNA-alkylating methyl methanesulfonate... | 0.01 | OrthoFinder | |
| Transcript_contig_89774 | 89774 | Hypothetical protein | 0.02 | OrthoFinder | |
| lcl|LHPG02000021.1_cds_PRW20820.1_4998 | PRW20820 | Cleavage and polyadenylation specificity factor subunit 1 | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| CC | GO:0005634 | nucleus | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | Enrichment |
| MF | GO:0000339 | RNA cap binding | IEP | Enrichment |
| MF | GO:0000340 | RNA 7-methylguanosine cap binding | IEP | Enrichment |
| MF | GO:0003677 | DNA binding | IEP | Enrichment |
| MF | GO:0003682 | chromatin binding | IEP | Enrichment |
| MF | GO:0003690 | double-stranded DNA binding | IEP | Enrichment |
| MF | GO:0003723 | RNA binding | IEP | Enrichment |
| MF | GO:0003729 | mRNA binding | IEP | Enrichment |
| MF | GO:0004386 | helicase activity | IEP | Enrichment |
| MF | GO:0004611 | phosphoenolpyruvate carboxykinase activity | IEP | Enrichment |
| MF | GO:0004832 | valine-tRNA ligase activity | IEP | Enrichment |
| MF | GO:0005515 | protein binding | IEP | Enrichment |
| MF | GO:0005524 | ATP binding | IEP | Enrichment |
| BP | GO:0005984 | disaccharide metabolic process | IEP | Enrichment |
| BP | GO:0005991 | trehalose metabolic process | IEP | Enrichment |
| BP | GO:0005992 | trehalose biosynthetic process | IEP | Enrichment |
| BP | GO:0006099 | tricarboxylic acid cycle | IEP | Enrichment |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0006351 | transcription, DNA-templated | IEP | Enrichment |
| BP | GO:0006396 | RNA processing | IEP | Enrichment |
| BP | GO:0006397 | mRNA processing | IEP | Enrichment |
| BP | GO:0006438 | valyl-tRNA aminoacylation | IEP | Enrichment |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Enrichment |
| MF | GO:0008094 | ATPase, acting on DNA | IEP | Enrichment |
| MF | GO:0008964 | phosphoenolpyruvate carboxylase activity | IEP | Enrichment |
| BP | GO:0009311 | oligosaccharide metabolic process | IEP | Enrichment |
| BP | GO:0009312 | oligosaccharide biosynthetic process | IEP | Enrichment |
| BP | GO:0015977 | carbon fixation | IEP | Enrichment |
| BP | GO:0016070 | RNA metabolic process | IEP | Enrichment |
| BP | GO:0016071 | mRNA metabolic process | IEP | Enrichment |
| MF | GO:0016887 | ATPase | IEP | Enrichment |
| MF | GO:0017076 | purine nucleotide binding | IEP | Enrichment |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Enrichment |
| BP | GO:0031123 | RNA 3'-end processing | IEP | Enrichment |
| BP | GO:0031124 | mRNA 3'-end processing | IEP | Enrichment |
| MF | GO:0032553 | ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Enrichment |
| BP | GO:0032774 | RNA biosynthetic process | IEP | Enrichment |
| BP | GO:0034637 | cellular carbohydrate biosynthetic process | IEP | Enrichment |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Enrichment |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Enrichment |
| MF | GO:0036094 | small molecule binding | IEP | Enrichment |
| MF | GO:0043167 | ion binding | IEP | Enrichment |
| MF | GO:0043168 | anion binding | IEP | Enrichment |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0044238 | primary metabolic process | IEP | Enrichment |
| BP | GO:0046351 | disaccharide biosynthetic process | IEP | Enrichment |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Enrichment |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Enrichment |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | Enrichment |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Enrichment |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Enrichment |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR004871 | Cleavage/polyA-sp_fac_asu_C | 1448 | 1740 |
| No external refs found! |