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  5. Cz09g14190.t1

Cz09g14190.t1


Description : Regulator of chromosome condensation, RCC1 [Interproscan].


Gene families : OG_01_0000020 (OrthoFinder) Phylogenetic Tree(s): OG0000020_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz09g14190.t1
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020801.76 tig00020801_g13957.t1 No description available 0.01 OrthoFinder
Cpa|evm.model.tig00020938.2 tig00020938_g16128.t1 Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre02.g089274 30785097 Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana 0.02 OrthoFinder
Dusal.1192s00003.1 33203438 Regulator of chromosome condensation, RCC1 [Interproscan]. 0.02 OrthoFinder
EOD04412 No alias Regulator of chromosome condensation (RCC1) repeat;... 0.01 OrthoFinder
EOD23616 No alias Regulator of chromosome condensation, RCC1 [Interproscan]. 0.01 OrthoFinder
OT_16G02100.1 No alias Regulator of chromosome condensation, RCC1 [Interproscan]. 0.02 OrthoFinder
PTI_17G02630.1 No alias Regulator of chromosome condensation, RCC1; BTB/POZ... 0.03 OrthoFinder
Sro1383_g267950.1 Contig1647.g14854 RCC1 domain-containing protein 1 0.01 OrthoFinder
Transcript_contig_2579 2579 Regulator of chromosome condensation, RCC1 [Interproscan]. 0.03 OrthoFinder
Transcript_contig_54555 54555 Regulator of chromosome condensation, RCC1 [Interproscan]. 0.01 OrthoFinder
Transcript_contig_58480 58480 Regulator of chromosome condensation, RCC1 [Interproscan]. 0.03 OrthoFinder
Transcript_contig_79616 79616 Regulator of chromosome condensation, RCC1 [Interproscan]. 0.02 OrthoFinder
Vocar.0015s0114.1 32899122 Regulator of chromosome condensation, RCC1 [Interproscan]. 0.03 OrthoFinder
Vocar.0017s0213.1 32891365 Regulator of chromosome condensation, RCC1 [Interproscan]. 0.02 OrthoFinder
Vocar.0075s0004.1 32895804 Regulator of chromosome condensation, RCC1 [Interproscan]. 0.02 OrthoFinder
XM_003055521.1 MicpuC2_37978, 37978 Regulator of chromosome condensation (RCC1) repeat;... 0.02 OrthoFinder
XM_003062733.1 MicpuC2_42406, 42406 Regulator of chromosome condensation, RCC1 [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000003.1_cds_PRW59483.1_6331 PRW59483 Ultraviolet-B receptor UVR8 isoform A 0.02 OrthoFinder
lcl|LHPG02000003.1_cds_PRW59484.1_6332 PRW59484 Ultraviolet-B receptor UVR8 isoform B 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
BP GO:0016226 iron-sulfur cluster assembly IEP Enrichment
MF GO:0017025 TBP-class protein binding IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
BP GO:0031163 metallo-sulfur cluster assembly IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140296 general transcription initiation factor binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR000408 Reg_chr_condens 193 244
IPR000408 Reg_chr_condens 35 81
IPR000408 Reg_chr_condens 142 190
IPR000408 Reg_chr_condens 84 138
No external refs found!