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  5. Cz09g04080.t1

Cz09g04080.t1


Description : tRNA pseudouridylate synthase B, C-terminal; Pseudouridine synthase II, N-terminal [Interproscan].


Gene families : OG_01_0000746 (OrthoFinder) Phylogenetic Tree(s): OG0000746_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz09g04080.t1
Cluster HCCA: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
Dusal.0221s00014.1 33197582 Pseudouridine synthase II, N-terminal; tRNA... 0.02 OrthoFinder
Sro9_g007670.1 Contig4120.g31535 Pseudouridine synthase B 0.03 OrthoFinder
Vocar.0009s0312.1 32893186 tRNA pseudouridylate synthase B, C-terminal;... 0.02 OrthoFinder
XM_002502941.1 MICPUN_83242, 83242 tRNA pseudouridylate synthase B, C-terminal;... 0.03 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491930.1_4938 KAA8491930 Putative tRNA pseudouridine synthase 1 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Enrichment
MF GO:0000213 tRNA-intron endonuclease activity IEP Enrichment
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004185 serine-type carboxypeptidase activity IEP Enrichment
MF GO:0004489 methylenetetrahydrofolate reductase (NAD(P)H) activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
MF GO:0004549 tRNA-specific ribonuclease activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006555 methionine metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008236 serine-type peptidase activity IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0009066 aspartate family amino acid metabolic process IEP Enrichment
BP GO:0009116 nucleoside metabolic process IEP Enrichment
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Enrichment
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016757 glycosyltransferase activity IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Enrichment
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Enrichment
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
MF GO:0017171 serine hydrolase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Enrichment
MF GO:0070008 serine-type exopeptidase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:1901135 carbohydrate derivative metabolic process IEP Enrichment
BP GO:1901657 glycosyl compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR032819 TruB_C 285 332
IPR002501 PsdUridine_synth_N 137 282
No external refs found!