Cz09g02040.t1

Description : Bromodomain; Methyl-CpG DNA binding [Interproscan].

Gene families : OG_01_0000168 (OrthoFinder) Phylogenetic Tree(s): OG0000168_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cz09g02040.t1
Cluster	HCCA: Cluster_72

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00001085.33	tig00001085_g6970.t1	Histone acetyltransferase GCN5 OS=Oryza sativa subsp. japonica	0.02	OrthoFinder
Cz08g10080.t1	No alias	Bromodomain; NET domain [Interproscan].	0.03	OrthoFinder
OT_07G00520.1	No alias	Bromodomain [Interproscan].	0.03	OrthoFinder
XM_003063209.1	MicpuC2_22450, 22450	Bromodomain [Interproscan].	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0018995	host cellular component	None	Extended
CC	GO:0033643	host cell part	None	Extended
CC	GO:0033646	host intracellular part	None	Extended
CC	GO:0033647	host intracellular organelle	None	Extended
CC	GO:0033648	host intracellular membrane-bounded organelle	None	Extended
CC	GO:0042025	host cell nucleus	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005216	ion channel activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001487	Bromodomain	130	212
IPR001739	Methyl_CpG_DNA-bd	24	71

External Links

No external refs found!