Cz08g26110.t1


Description : 26S proteasome regulatory subunit Rpn7/COP9 signalosome complex subunit 1; Proteasome component (PCI) domain [Interproscan].


Gene families : OG_01_0003515 (OrthoFinder) Phylogenetic Tree(s): OG0003515_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz08g26110.t1
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000615.75 tig00000615_g2605.t1 Protein degradation.26S proteasome.regulatory... 0.08 OrthoFinder
Cre13.g581450 30784003, RPN7 Protein degradation.26S proteasome.regulatory... 0.16 OrthoFinder
EOD23564 No alias 26S proteasome regulatory subunit Rpn7/COP9 signalosome... 0.04 OrthoFinder
EOD33243 No alias 26S proteasome regulatory subunit Rpn7/COP9 signalosome... 0.04 OrthoFinder
OT_09G02120.1 No alias Proteasome component (PCI) domain; 26S proteasome... 0.03 OrthoFinder
PTI_02G06010.1 No alias 26S proteasome regulatory subunit Rpn7/COP9 signalosome... 0.11 OrthoFinder
Sro2134_g315960.1 Contig2353.g19341 ATPase regulatory subunit 6 0.15 OrthoFinder
TP05G01650.1 No alias Proteasome component (PCI) domain; 26S proteasome... 0.1 OrthoFinder
Transcript_contig_89237 89237 Proteasome component (PCI) domain; 26S proteasome... 0.03 OrthoFinder
XM_002508764.1 MICPUN_109050, 109050 Proteasome component (PCI) domain; 26S proteasome... 0.09 OrthoFinder
XM_003056762.1 MicpuC2_44063, 44063 26S proteasome regulatory subunit Rpn7/COP9 signalosome... 0.04 OrthoFinder
lcl|BLLF01001077.1_cds_GFH16965.1_11442 HaLaN_13491, GFH16965 PCI domain-containing protein 0.06 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60726.1_4407 PRW60726 26S proteasome non-ATPase regulatory subunit 6-like protein 0.04 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496364.1_93 KAA8496364 26S proteasome non-ATPase regulatory subunit 6-like 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004298 threonine-type endopeptidase activity IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005787 signal peptidase complex IEP Enrichment
CC GO:0005789 endoplasmic reticulum membrane IEP Enrichment
CC GO:0005839 proteasome core complex IEP Enrichment
BP GO:0006333 chromatin assembly or disassembly IEP Enrichment
BP GO:0006465 signal peptide processing IEP Enrichment
BP GO:0006487 protein N-linked glycosylation IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
CC GO:0008250 oligosaccharyltransferase complex IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
BP GO:0016485 protein processing IEP Enrichment
MF GO:0016757 glycosyltransferase activity IEP Enrichment
MF GO:0016758 hexosyltransferase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
CC GO:0030118 clathrin coat IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030125 clathrin vesicle coat IEP Enrichment
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Enrichment
CC GO:0030132 clathrin coat of coated pit IEP Enrichment
CC GO:0031090 organelle membrane IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
MF GO:0070003 threonine-type peptidase activity IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
InterPro domains Description Start Stop
IPR000717 PCI_dom 67 169
IPR019585 Rpn7/CSN1 3 51
No external refs found!