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  5. Cz08g22230.t1

Cz08g22230.t1


Description : WD40 repeat; TUP1-like enhancer of split [Interproscan].


Gene families : OG_01_0001025 (OrthoFinder) Phylogenetic Tree(s): OG0001025_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz08g22230.t1
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
EOD41739 No alias WD40 repeat [Interproscan]. 0.01 OrthoFinder
OT_07G04030.1 No alias TUP1-like enhancer of split; WD40 repeat [Interproscan]. 0.03 OrthoFinder
PTI_03G02510.1 No alias TUP1-like enhancer of split; WD40 repeat [Interproscan]. 0.02 OrthoFinder
Sro30_g019370.1 Contig3962.g30337 Protein HIR1 0.01 OrthoFinder
Sro841_g209590.1 Contig2025.g17357 Chromatin assembly factor 1 subunit FAS2 homolog 0.02 OrthoFinder
XM_002500030.1 MICPUN_106763, 106763 Hira like protein 0.03 OrthoFinder
lcl|BLLF01000388.1_cds_GFH11268.1_5745 HaLaN_06742, GFH11268 Protein HIRA 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005664 nuclear origin of replication recognition complex IEP Enrichment
BP GO:0006354 DNA-templated transcription, elongation IEP Enrichment
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Enrichment
BP GO:0006606 protein import into nucleus IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
CC GO:0008023 transcription elongation factor complex IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
BP GO:0016569 covalent chromatin modification IEP Enrichment
BP GO:0016570 histone modification IEP Enrichment
CC GO:0016593 Cdc73/Paf1 complex IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0034504 protein localization to nucleus IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
MF GO:0051087 chaperone binding IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051170 import into nucleus IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
MF GO:0061608 nuclear import signal receptor activity IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140142 nucleocytoplasmic carrier activity IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
InterPro domains Description Start Stop
IPR011494 Hira 697 890
IPR001680 WD40_repeat 57 93
IPR001680 WD40_repeat 162 195
IPR001680 WD40_repeat 118 152
No external refs found!