Cz08g20060.t1

Description : U4/U6.U5 small nuclear ribonucleoprotein 27kDa protein; Cytochrome c oxidase, subunit VIb [Interproscan].

Gene families : OG_01_0002790 (OrthoFinder) Phylogenetic Tree(s): OG0002790_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cz08g20060.t1
Cluster	HCCA: Cluster_97

Target	Alias	Description	ECC score	Gene Family Method
Cre10.g465950	30790579	RNA processing.RNA splicing.U2-type-intron-specific...	0.02	OrthoFinder
Cre10.g466000	30789892	No description available	0.02	OrthoFinder
Dusal.0057s00032.1	33192934	U4/U6.U5 small nuclear ribonucleoprotein 27kDa protein...	0.02	OrthoFinder
lcl\|LHPG02000005.1_cds_PRW58421.1_7700	PRW58421	U4 small nuclear ribonucleo 27 kDa	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000350	generation of catalytic spliceosome for second transesterification step	IEP	Enrichment
BP	GO:0001510	RNA methylation	IEP	Enrichment
BP	GO:0002949	tRNA threonylcarbamoyladenosine modification	IEP	Enrichment
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
MF	GO:0003723	RNA binding	IEP	Enrichment
MF	GO:0003747	translation release factor activity	IEP	Enrichment
MF	GO:0004402	histone acetyltransferase activity	IEP	Enrichment
MF	GO:0004659	prenyltransferase activity	IEP	Enrichment
MF	GO:0005488	binding	IEP	Enrichment
CC	GO:0005643	nuclear pore	IEP	Enrichment
CC	GO:0005667	transcription regulator complex	IEP	Enrichment
CC	GO:0005672	transcription factor TFIIA complex	IEP	Enrichment
BP	GO:0006325	chromatin organization	IEP	Enrichment
BP	GO:0006352	DNA-templated transcription, initiation	IEP	Enrichment
BP	GO:0006354	DNA-templated transcription, elongation	IEP	Enrichment
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Enrichment
BP	GO:0006367	transcription initiation from RNA polymerase II promoter	IEP	Enrichment
BP	GO:0006368	transcription elongation from RNA polymerase II promoter	IEP	Enrichment
BP	GO:0006397	mRNA processing	IEP	Enrichment
BP	GO:0006415	translational termination	IEP	Enrichment
BP	GO:0006473	protein acetylation	IEP	Enrichment
BP	GO:0006475	internal protein amino acid acetylation	IEP	Enrichment
BP	GO:0006553	lysine metabolic process	IEP	Enrichment
CC	GO:0008023	transcription elongation factor complex	IEP	Enrichment
MF	GO:0008079	translation termination factor activity	IEP	Enrichment
MF	GO:0008134	transcription factor binding	IEP	Enrichment
MF	GO:0008135	translation factor activity, RNA binding	IEP	Enrichment
MF	GO:0008318	protein prenyltransferase activity	IEP	Enrichment
MF	GO:0008837	diaminopimelate epimerase activity	IEP	Enrichment
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	Enrichment
BP	GO:0009085	lysine biosynthetic process	IEP	Enrichment
BP	GO:0009089	lysine biosynthetic process via diaminopimelate	IEP	Enrichment
BP	GO:0009451	RNA modification	IEP	Enrichment
BP	GO:0009891	positive regulation of biosynthetic process	IEP	Enrichment
BP	GO:0009893	positive regulation of metabolic process	IEP	Enrichment
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Enrichment
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Enrichment
BP	GO:0016043	cellular component organization	IEP	Enrichment
BP	GO:0016071	mRNA metabolic process	IEP	Enrichment
BP	GO:0016556	mRNA modification	IEP	Enrichment
BP	GO:0016569	covalent chromatin modification	IEP	Enrichment
BP	GO:0016570	histone modification	IEP	Enrichment
BP	GO:0016573	histone acetylation	IEP	Enrichment
CC	GO:0016593	Cdc73/Paf1 complex	IEP	Enrichment
MF	GO:0016854	racemase and epimerase activity	IEP	Enrichment
MF	GO:0016855	racemase and epimerase activity, acting on amino acids and derivatives	IEP	Enrichment
MF	GO:0017025	TBP-class protein binding	IEP	Enrichment
BP	GO:0018205	peptidyl-lysine modification	IEP	Enrichment
BP	GO:0018342	protein prenylation	IEP	Enrichment
BP	GO:0018393	internal peptidyl-lysine acetylation	IEP	Enrichment
BP	GO:0018394	peptidyl-lysine acetylation	IEP	Enrichment
MF	GO:0019899	enzyme binding	IEP	Enrichment
BP	GO:0022411	cellular component disassembly	IEP	Enrichment
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	Enrichment
MF	GO:0031072	heat shock protein binding	IEP	Enrichment
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Enrichment
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Enrichment
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Enrichment
BP	GO:0032774	RNA biosynthetic process	IEP	Enrichment
BP	GO:0032784	regulation of DNA-templated transcription, elongation	IEP	Enrichment
BP	GO:0032786	positive regulation of DNA-templated transcription, elongation	IEP	Enrichment
BP	GO:0032968	positive regulation of transcription elongation from RNA polymerase II promoter	IEP	Enrichment
BP	GO:0032984	protein-containing complex disassembly	IEP	Enrichment
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	Enrichment
BP	GO:0034243	regulation of transcription elongation from RNA polymerase II promoter	IEP	Enrichment
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Enrichment
MF	GO:0036361	racemase activity, acting on amino acids and derivatives	IEP	Enrichment
BP	GO:0043412	macromolecule modification	IEP	Enrichment
BP	GO:0043414	macromolecule methylation	IEP	Enrichment
BP	GO:0043543	protein acylation	IEP	Enrichment
BP	GO:0043624	cellular protein complex disassembly	IEP	Enrichment
BP	GO:0043647	inositol phosphate metabolic process	IEP	Enrichment
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	Enrichment
BP	GO:0043933	protein-containing complex subunit organization	IEP	Enrichment
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Enrichment
MF	GO:0045182	translation regulator activity	IEP	Enrichment
BP	GO:0045893	positive regulation of transcription, DNA-templated	IEP	Enrichment
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	Enrichment
BP	GO:0045944	positive regulation of transcription by RNA polymerase II	IEP	Enrichment
BP	GO:0046164	alcohol catabolic process	IEP	Enrichment
BP	GO:0046174	polyol catabolic process	IEP	Enrichment
BP	GO:0046451	diaminopimelate metabolic process	IEP	Enrichment
BP	GO:0046838	phosphorylated carbohydrate dephosphorylation	IEP	Enrichment
BP	GO:0046855	inositol phosphate dephosphorylation	IEP	Enrichment
MF	GO:0047661	amino-acid racemase activity	IEP	Enrichment
BP	GO:0048518	positive regulation of biological process	IEP	Enrichment
BP	GO:0048522	positive regulation of cellular process	IEP	Enrichment
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Enrichment
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	Enrichment
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	Enrichment
BP	GO:0070525	tRNA threonylcarbamoyladenosine metabolic process	IEP	Enrichment
BP	GO:0071545	inositol phosphate catabolic process	IEP	Enrichment
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	Enrichment
BP	GO:0071840	cellular component organization or biogenesis	IEP	Enrichment
BP	GO:0080009	mRNA methylation	IEP	Enrichment
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	Enrichment
CC	GO:0090575	RNA polymerase II transcription regulator complex	IEP	Enrichment
MF	GO:0097159	organic cyclic compound binding	IEP	Enrichment
BP	GO:0097354	prenylation	IEP	Enrichment
MF	GO:0140296	general transcription initiation factor binding	IEP	Enrichment
CC	GO:0140513	nuclear protein-containing complex	IEP	Enrichment
MF	GO:1901363	heterocyclic compound binding	IEP	Enrichment
BP	GO:1901616	organic hydroxy compound catabolic process	IEP	Enrichment
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	Enrichment
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR013957	SNRNP27	343	399
IPR003213	Cyt_c_oxidase_su6B	9	68

External Links

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Cz08g20060.t1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation