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  5. Cz08g20010.t1

Cz08g20010.t1


Description : Integrase zinc-binding domain; Integrase, catalytic core; Chromo domain; Reverse transcriptase domain; Reverse transcriptase, RNase H-like domain [Interproscan].


Gene families : OG_01_0000071 (OrthoFinder) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz08g20010.t1
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
Cz07g09140.t1 No alias Hypothetical protein 0.05 OrthoFinder
Cz18g14030.t1 No alias Reverse transcriptase domain [Interproscan]. 0.03 OrthoFinder
Sro1418_g270990.1 Contig4752.g35215 Transposon Tf2 0.01 OrthoFinder
lcl|BLLF01000958.1_cds_GFH16187.1_10664 HaLaN_12562, GFH16187 Hypothetical protein 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498182.1_7135 KAA8498182 Hypothetical protein 0.01 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498877.1_7830 KAA8498877 Transposon Ty3-G Gag-Pol polyprotein 0.01 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495320.1_1318 KAA8495320 Retrotransposon-derived protein PEG10 0.01 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495846.1_1844 KAA8495846 Transposon Ty3-I Gag-Pol polyprotein 0.01 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494765.1_3295 KAA8494765 Transposon Ty3-I Gag-Pol polyprotein 0.02 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8493085.1_2821 KAA8493085 Transposon Ty3-I Gag-Pol polyprotein 0.01 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491585.1_5053 KAA8491585 Transposon Ty3-I Gag-Pol polyprotein 0.01 OrthoFinder
lcl|VRMN01000030.1_cds_KAA8490384.1_3741 KAA8490384 Transposon Ty3-I Gag-Pol polyprotein 0.01 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Enrichment
MF GO:0005216 ion channel activity IEP Enrichment
MF GO:0015267 channel activity IEP Enrichment
MF GO:0015276 ligand-gated ion channel activity IEP Enrichment
MF GO:0022803 passive transmembrane transporter activity IEP Enrichment
MF GO:0022834 ligand-gated channel activity IEP Enrichment
InterPro domains Description Start Stop
IPR041588 Integrase_H2C2 421 478
IPR000477 RT_dom 1 66
IPR023780 Chromo_domain 790 843
IPR041373 RT_RNaseH 155 254
IPR001584 Integrase_cat-core 498 607
No external refs found!