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  5. Cz08g14040.t1

Cz08g14040.t1


Description : Strawberry notch, helicase C domain; Ubiquitin-associated domain; Strawberry notch, AAA domain [Interproscan].


Gene families : OG_01_0000467 (OrthoFinder) Phylogenetic Tree(s): OG0000467_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz08g14040.t1
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
Cre01.g053250 30789240 Protein FORGETTER 1 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cre02.g095045 30785065 Protein FORGETTER 1 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre13.g578501 30784198 Protein FORGETTER 1 OS=Arabidopsis thaliana 0.03 OrthoFinder
Dusal.0166s00009.1 33188727 Strawberry notch, AAA domain [Interproscan]. 0.02 OrthoFinder
Dusal.0695s00005.1 33201554 Strawberry notch, helicase C domain; Strawberry notch,... 0.02 OrthoFinder
EOD10242 No alias Strawberry notch, AAA domain; Strawberry notch, helicase... 0.02 OrthoFinder
EOD16011 No alias Strawberry notch, helicase C domain [Interproscan]. 0.03 OrthoFinder
EOD16012 No alias Strawberry notch, AAA domain [Interproscan]. 0.02 OrthoFinder
EOD41135 No alias Strawberry notch, AAA domain; Strawberry notch, helicase... 0.01 OrthoFinder
OT_03G05510.1 No alias Strawberry notch, helicase C domain; Strawberry notch,... 0.02 OrthoFinder
Sro106_g053630.1 Contig1122.g10760 Strawberry notch homolog 2 0.02 OrthoFinder
Transcript_contig_55863 55863 Strawberry notch, helicase C domain; Strawberry notch,... 0.01 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58082.1_8009 PRW58082 Strawberry notch-like protein 1-like 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Enrichment
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005801 cis-Golgi network IEP Enrichment
CC GO:0005887 integral component of plasma membrane IEP Enrichment
BP GO:0006284 base-excision repair IEP Enrichment
BP GO:0006354 DNA-templated transcription, elongation IEP Enrichment
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
BP GO:0006906 vesicle fusion IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0007030 Golgi organization IEP Enrichment
CC GO:0008023 transcription elongation factor complex IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
BP GO:0009306 protein secretion IEP Enrichment
BP GO:0010921 regulation of phosphatase activity IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
BP GO:0016050 vesicle organization IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
BP GO:0016569 covalent chromatin modification IEP Enrichment
BP GO:0016570 histone modification IEP Enrichment
CC GO:0016593 Cdc73/Paf1 complex IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
BP GO:0019220 regulation of phosphate metabolic process IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
MF GO:0019902 phosphatase binding IEP Enrichment
MF GO:0019903 protein phosphatase binding IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
CC GO:0031226 intrinsic component of plasma membrane IEP Enrichment
BP GO:0031399 regulation of protein modification process IEP Enrichment
BP GO:0032268 regulation of cellular protein metabolic process IEP Enrichment
BP GO:0032940 secretion by cell IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
MF GO:0035251 UDP-glucosyltransferase activity IEP Enrichment
BP GO:0035303 regulation of dephosphorylation IEP Enrichment
BP GO:0035304 regulation of protein dephosphorylation IEP Enrichment
BP GO:0035592 establishment of protein localization to extracellular region IEP Enrichment
CC GO:0042575 DNA polymerase complex IEP Enrichment
CC GO:0043625 delta DNA polymerase complex IEP Enrichment
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
MF GO:0046527 glucosyltransferase activity IEP Enrichment
BP GO:0046903 secretion IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0048280 vesicle fusion with Golgi apparatus IEP Enrichment
BP GO:0048284 organelle fusion IEP Enrichment
BP GO:0050790 regulation of catalytic activity IEP Enrichment
BP GO:0051174 regulation of phosphorus metabolic process IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0051336 regulation of hydrolase activity IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0061024 membrane organization IEP Enrichment
BP GO:0061025 membrane fusion IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
BP GO:0065009 regulation of molecular function IEP Enrichment
BP GO:0071692 protein localization to extracellular region IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0090174 organelle membrane fusion IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
BP GO:0140352 export from cell IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
InterPro domains Description Start Stop
IPR039187 SNO_AAA 14 171
IPR026937 SBNO_Helicase_C_dom 318 672
IPR015940 UBA 1304 1338
No external refs found!