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  5. Cz08g01260.t1

Cz08g01260.t1


Description : Zinc finger, RING-type; Helicase, C-terminal; SNF2-related, N-terminal domain [Interproscan].


Gene families : OG_01_0001793 (OrthoFinder) Phylogenetic Tree(s): OG0001793_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz08g01260.t1
Cluster HCCA: Cluster_159

Target Alias Description ECC score Gene Family Method Actions
Cre13.g603400 30784430 DNA repair protein RAD5B OS=Arabidopsis thaliana 0.03 OrthoFinder
Cz05g36010.t1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.04 OrthoFinder
Dusal.0111s00004.1 33199817 SNF2-related, N-terminal domain [Interproscan]. 0.03 OrthoFinder
EOD26623 No alias SNF2-related, N-terminal domain [Interproscan]. 0.03 OrthoFinder
XM_003059448.1 MicpuC2_47521, 47521 SNF2 super family 0.02 OrthoFinder
lcl|LHPG02000028.1_cds_PRW05825.1_6040 PRW05825 E3 ubiquitin-ligase SHPRH 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006366 transcription by RNA polymerase II IEP Enrichment
BP GO:0006778 porphyrin-containing compound metabolic process IEP Enrichment
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Enrichment
BP GO:0006783 heme biosynthetic process IEP Enrichment
BP GO:0006784 heme A biosynthetic process IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0042168 heme metabolic process IEP Enrichment
BP GO:0042440 pigment metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0046148 pigment biosynthetic process IEP Enrichment
BP GO:0046160 heme a metabolic process IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 1952 2055
IPR001841 Znf_RING 1854 1895
IPR000330 SNF2_N 273 890
No external refs found!