Cz07g27260.t1

Description : Clathrin, heavy chain, propeller repeat; Clathrin, heavy chain/VPS, 7-fold repeat; Clathrin-H-link; Clathrin, heavy chain, linker, core motif [Interproscan].

Gene families : OG_01_0002678 (OrthoFinder) Phylogenetic Tree(s): OG0002678_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cz07g27260.t1
Cluster	HCCA: Cluster_23

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000042.11	tig00000042_g15397.t1	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.04	OrthoFinder
Cre02.g101400	30785683, CHC1	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.02	OrthoFinder
Dusal.0114s00011.1	33202239	Clathrin-H-link; Clathrin, heavy chain, linker, core...	0.03	OrthoFinder
EOD40774	No alias	Clathrin heavy chain [Ensembl].	0.04	OrthoFinder
OT_01G01810.1	No alias	Clathrin, heavy chain/VPS, 7-fold repeat;...	0.07	OrthoFinder
PTI_15G00340.1	No alias	Clathrin, heavy chain/VPS, 7-fold repeat;...	0.03	OrthoFinder
Sro1407_g270000.1	Contig1773.g15693	Clathrin heavy chain 1	0.08	OrthoFinder
TP10G03700.1	No alias	Clathrin-H-link; Clathrin, heavy chain, linker, core...	0.05	OrthoFinder
Transcript_contig_54377	54377	Clathrin, heavy chain/VPS, 7-fold repeat;...	0.03	OrthoFinder
Vocar.0036s0110.1	32892264	Clathrin-H-link; Clathrin, heavy chain/VPS, 7-fold...	0.02	OrthoFinder
XM_002500509.1	MICPUN_105289, 105289	Clathrin, heavy chain, propeller repeat; Clathrin, heavy...	0.03	OrthoFinder
lcl\|BLLF01003272.1_cds_GFH26883.1_21360	HaLaN_25106, GFH26883	Clathrin heavy chain	0.03	OrthoFinder
lcl\|LHPG02000001.1_cds_PRW61204.1_268	PRW61204	Clathrin heavy chain	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005198	structural molecule activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	Interproscan
CC	GO:0030117	membrane coat	None	Extended
CC	GO:0030118	clathrin coat	None	Extended
CC	GO:0030120	vesicle coat	None	Extended
CC	GO:0030125	clathrin vesicle coat	None	Extended
CC	GO:0030130	clathrin coat of trans-Golgi network vesicle	IEA	Interproscan
CC	GO:0030132	clathrin coat of coated pit	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0098797	plasma membrane protein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Enrichment
MF	GO:0004559	alpha-mannosidase activity	IEP	Enrichment
MF	GO:0004571	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	IEP	Enrichment
CC	GO:0005783	endoplasmic reticulum	IEP	Enrichment
BP	GO:0006887	exocytosis	IEP	Enrichment
BP	GO:0009966	regulation of signal transduction	IEP	Enrichment
BP	GO:0010646	regulation of cell communication	IEP	Enrichment
MF	GO:0015923	mannosidase activity	IEP	Enrichment
MF	GO:0015924	mannosyl-oligosaccharide mannosidase activity	IEP	Enrichment
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Enrichment
BP	GO:0023051	regulation of signaling	IEP	Enrichment
CC	GO:0030119	AP-type membrane coat adaptor complex	IEP	Enrichment
CC	GO:0030126	COPI vesicle coat	IEP	Enrichment
CC	GO:0030131	clathrin adaptor complex	IEP	Enrichment
BP	GO:0032012	regulation of ARF protein signal transduction	IEP	Enrichment
BP	GO:0032940	secretion by cell	IEP	Enrichment
CC	GO:0043227	membrane-bounded organelle	IEP	Enrichment
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Enrichment
BP	GO:0046578	regulation of Ras protein signal transduction	IEP	Enrichment
BP	GO:0046903	secretion	IEP	Enrichment
BP	GO:0048193	Golgi vesicle transport	IEP	Enrichment
BP	GO:0048583	regulation of response to stimulus	IEP	Enrichment
BP	GO:0050789	regulation of biological process	IEP	Enrichment
BP	GO:0050794	regulation of cellular process	IEP	Enrichment
BP	GO:0051056	regulation of small GTPase mediated signal transduction	IEP	Enrichment
BP	GO:0065007	biological regulation	IEP	Enrichment
CC	GO:0110165	cellular anatomical entity	IEP	Enrichment
BP	GO:0140352	export from cell	IEP	Enrichment
BP	GO:1902531	regulation of intracellular signal transduction	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000547	Clathrin_H-chain/VPS_repeat	699	836
IPR000547	Clathrin_H-chain/VPS_repeat	848	972
IPR000547	Clathrin_H-chain/VPS_repeat	554	691
IPR000547	Clathrin_H-chain/VPS_repeat	1286	1430
IPR000547	Clathrin_H-chain/VPS_repeat	1143	1279
IPR000547	Clathrin_H-chain/VPS_repeat	994	1131
IPR000547	Clathrin_H-chain/VPS_repeat	1439	1577
IPR022365	Clathrin_H-chain_propeller_rpt	154	197
IPR015348	Clathrin_H-chain_linker_core	344	364

External Links

No external refs found!

Cz07g27260.t1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation