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  5. Cz07g15240.t1

Cz07g15240.t1


Description : Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain; Integrase zinc-binding domain; Integrase, catalytic core; Retroviral aspartyl protease; Reverse transcriptase domain [Interproscan].


Gene families : OG_01_0000060 (OrthoFinder) Phylogenetic Tree(s): OG0000060_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz07g15240.t1
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
Cz03g14150.t1 No alias Integrase zinc-binding domain; Integrase, catalytic... 0.05 OrthoFinder
Cz03g40130.t1 No alias Reverse transcriptase/retrotransposon-derived protein,... 0.04 OrthoFinder
Cz03g40140.t1 No alias Chromo domain; Integrase, catalytic core [Interproscan]. 0.05 OrthoFinder
Cz04g31300.t1 No alias Chromo domain [Interproscan]. 0.05 OrthoFinder
Cz05g14160.t1 No alias Retroviral aspartyl protease; Retrotransposon gag... 0.04 OrthoFinder
Cz06g10270.t1 No alias Reverse transcriptase/retrotransposon-derived protein,... 0.07 OrthoFinder
Cz06g11150.t1 No alias Reverse transcriptase, RNase H-like domain; Integrase... 0.03 OrthoFinder
Cz06g22260.t1 No alias Hypothetical protein 0.06 OrthoFinder
Cz09g23160.t1 No alias Integrase zinc-binding domain; Integrase, catalytic... 0.05 OrthoFinder
Cz10g06220.t1 No alias Reverse transcriptase/retrotransposon-derived protein,... 0.05 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499396.1_8349 KAA8499396 Transposon Ty3-G Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495847.1_1845 KAA8495847 Transposon Ty3-G Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494421.1_2951 KAA8494421 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490785.1_6041 KAA8490785 Transposon Ty3-G Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000023.1_cds_KAA8490537.1_5903 KAA8490537 Transposon Ty3-G Gag-Pol polyprotein 0.04 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0043531 ADP binding IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
InterPro domains Description Start Stop
IPR041577 RT_RNaseH_2 495 593
IPR000477 RT_dom 272 430
IPR001584 Integrase_cat-core 793 903
IPR041588 Integrase_H2C2 718 772
No external refs found!