Cz07g09130.t1

Description : Retroviral aspartyl protease; Integrase zinc-binding domain; Integrase, catalytic core; Chromo domain; Reverse transcriptase domain; Reverse transcriptase, RNase H-like domain [Interproscan].

Gene families : OG_01_0000071 (OrthoFinder) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cz07g09130.t1

Target	Alias	Description	ECC score	Gene Family Method
Cz07g09140.t1	No alias	Hypothetical protein	0.03	OrthoFinder
Cz18g14030.t1	No alias	Reverse transcriptase domain [Interproscan].	0.04	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8498182.1_7135	KAA8498182	Hypothetical protein	0.02	OrthoFinder
lcl\|VRMN01000007.1_cds_KAA8493461.1_9762	KAA8493461	Transposon Ty3-I Gag-Pol polyprotein	0.02	OrthoFinder
lcl\|VRMN01000012.1_cds_KAA8491590.1_5058	KAA8491590	Transposon Ty3-I Gag-Pol polyprotein	0.02	OrthoFinder
lcl\|VRMN01000021.1_cds_KAA8490612.1_5711	KAA8490612	Transposon Ty3-I Gag-Pol polyprotein	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEP	Enrichment
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Enrichment
BP	GO:0005975	carbohydrate metabolic process	IEP	Enrichment
MF	GO:0015276	ligand-gated ion channel activity	IEP	Enrichment
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Enrichment
MF	GO:0022834	ligand-gated channel activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000477	RT_dom	441	600
IPR001584	Integrase_cat-core	1057	1166
IPR041373	RT_RNaseH	689	789
IPR023780	Chromo_domain	1321	1375
IPR041588	Integrase_H2C2	980	1035

External Links

No external refs found!

Cz07g09130.t1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation