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  5. Cz07g00140.t1

Cz07g00140.t1


Description : Regulator of chromosome condensation, RCC1 [Interproscan].


Gene families : OG_01_0000020 (OrthoFinder) Phylogenetic Tree(s): OG0000020_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz07g00140.t1
Cluster HCCA: Cluster_149

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000404.4 tig00000404_g369.t1 No description available 0.01 OrthoFinder
Cpa|evm.model.tig00020801.76 tig00020801_g13957.t1 No description available 0.02 OrthoFinder
Cre01.g025900 30789384 Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre02.g089274 30785097 Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana 0.02 OrthoFinder
EOD08802 No alias Regulator of chromosome condensation, RCC1 [Interproscan]. 0.02 OrthoFinder
OT_01G06410.1 No alias Regulator of chromosome condensation, RCC1 [Interproscan]. 0.02 OrthoFinder
OT_16G02830.1 No alias Regulator of chromosome condensation (RCC1) repeat;... 0.02 OrthoFinder
PTI_12G00160.1 No alias Regulator of chromosome condensation (RCC1) repeat;... 0.02 OrthoFinder
Sro289_g109030.1 Contig4471.g33587 RCC1 and BTB domain-containing protein 2 0.02 OrthoFinder
Transcript_contig_58480 58480 Regulator of chromosome condensation, RCC1 [Interproscan]. 0.03 OrthoFinder
XM_003054727.1 MicpuC2_46092, 46092 Regulator of chromosome condensation, RCC1 [Interproscan]. 0.02 OrthoFinder
XM_003062733.1 MicpuC2_42406, 42406 Regulator of chromosome condensation, RCC1 [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01000610.1_cds_GFH13424.1_7901 HaLaN_09308, GFH13424 Regulator of chromosome condensation, RCC1 [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000003.1_cds_PRW59483.1_6331 PRW59483 Ultraviolet-B receptor UVR8 isoform A 0.02 OrthoFinder
lcl|LHPG02000003.1_cds_PRW59484.1_6332 PRW59484 Ultraviolet-B receptor UVR8 isoform B 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0005984 disaccharide metabolic process IEP Enrichment
BP GO:0005991 trehalose metabolic process IEP Enrichment
BP GO:0005992 trehalose biosynthetic process IEP Enrichment
BP GO:0006528 asparagine metabolic process IEP Enrichment
BP GO:0006529 asparagine biosynthetic process IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
BP GO:0009066 aspartate family amino acid metabolic process IEP Enrichment
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Enrichment
BP GO:0009311 oligosaccharide metabolic process IEP Enrichment
BP GO:0009312 oligosaccharide biosynthetic process IEP Enrichment
BP GO:0016051 carbohydrate biosynthetic process IEP Enrichment
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Enrichment
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Enrichment
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
BP GO:0031123 RNA 3'-end processing IEP Enrichment
BP GO:0031124 mRNA 3'-end processing IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0046351 disaccharide biosynthetic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR000408 Reg_chr_condens 330 388
IPR000408 Reg_chr_condens 281 327
IPR000408 Reg_chr_condens 216 277
IPR000408 Reg_chr_condens 391 441
IPR000408 Reg_chr_condens 94 155
No external refs found!