Description : Ribosomal protein S6e [Interproscan].
Gene families : OG_01_0002771 (OrthoFinder) Phylogenetic Tree(s): OG0002771_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Cz06g36040.t1 | |
Cluster | HCCA: Cluster_16 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cpa|evm.model.tig00000704.73 | tig00000704_g3357.t1 | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.18 | OrthoFinder | |
Cre09.g400650 | 30780656, RPS6 | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.27 | OrthoFinder | |
Dusal.0276s00013.1 | 33203073 | Ribosomal protein S6e [Interproscan]. | 0.08 | OrthoFinder | |
EOD22278 | No alias | Ribosomal protein S6e [Interproscan]. | 0.09 | OrthoFinder | |
OT_03G02800.1 | No alias | Ribosomal protein S6e [Interproscan]. | 0.18 | OrthoFinder | |
PTI_03G02600.1 | No alias | Ribosomal protein S6e [Interproscan]. | 0.15 | OrthoFinder | |
Sro169_g075080.1 | Contig4412.g33128 | 40S ribosomal protein S6 | 0.21 | OrthoFinder | |
SymbC1.scaffold2867.6 | 2867.6 | Ribosomal protein S6e [Interproscan]. | 0.07 | OrthoFinder | |
TP14G02490.1 | No alias | Ribosomal protein S6e [Interproscan]. | 0.22 | OrthoFinder | |
Transcript_contig_80061 | 80061 | Ribosomal protein S6e [Interproscan]. | 0.05 | OrthoFinder | |
Vocar.0008s0246.1 | 32896957 | Ribosomal protein S6e [Interproscan]. | 0.12 | OrthoFinder | |
XM_002499404.1 | MICPUN_90125, 90125 | Ribosomal protein S6e [Interproscan]. | 0.18 | OrthoFinder | |
XM_003055713.1 | MicpuC2_49409, 49409 | Ribosomal protein S6e [Interproscan]. | 0.11 | OrthoFinder | |
lcl|BLLF01000178.1_cds_GFH08697.1_3174 | HaLaN_03704, GFH08697 | 40S ribosomal protein S6 | 0.12 | OrthoFinder | |
lcl|LHPG02000012.1_cds_PRW44964.1_1851 | PRW44964 | 40S ribosomal S6 isoform A | 0.18 | OrthoFinder | |
lcl|VRMN01000005.1_cds_KAA8494269.1_4133 | KAA8494269 | 40S ribosomal protein S6 | 0.14 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan |
CC | GO:0005840 | ribosome | IEA | Interproscan |
BP | GO:0006412 | translation | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
MF | GO:0003723 | RNA binding | IEP | Enrichment |
MF | GO:0003937 | IMP cyclohydrolase activity | IEP | Enrichment |
MF | GO:0004643 | phosphoribosylaminoimidazolecarboxamide formyltransferase activity | IEP | Enrichment |
MF | GO:0008097 | 5S rRNA binding | IEP | Enrichment |
CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | Enrichment |
CC | GO:0015934 | large ribosomal subunit | IEP | Enrichment |
MF | GO:0016742 | hydroxymethyl-, formyl- and related transferase activity | IEP | Enrichment |
MF | GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | IEP | Enrichment |
MF | GO:0016814 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines | IEP | Enrichment |
MF | GO:0019238 | cyclohydrolase activity | IEP | Enrichment |
MF | GO:0019843 | rRNA binding | IEP | Enrichment |
CC | GO:0019898 | extrinsic component of membrane | IEP | Enrichment |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Enrichment |
BP | GO:0042254 | ribosome biogenesis | IEP | Enrichment |
BP | GO:0044085 | cellular component biogenesis | IEP | Enrichment |
CC | GO:0044391 | ribosomal subunit | IEP | Enrichment |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001377 | Ribosomal_S6e | 60 | 187 |
No external refs found! |