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Description : Ribonuclease, PIN domain [Interproscan].
Gene families : OG_01_0002649 (OrthoFinder) Phylogenetic Tree(s): OG0002649_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cz06g29250.t1 | |
| Cluster | HCCA: Cluster_92 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cre01.g031750 | 30788745 | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.11 | OrthoFinder | |
| EOD32208 | No alias | Ribonuclease, PIN domain; Nin one binding (NOB1)... | 0.13 | OrthoFinder | |
| OT_06G04030.1 | No alias | Ribonuclease, PIN domain; Nin one binding (NOB1)... | 0.09 | OrthoFinder | |
| PTI_01G03580.1 | No alias | Ribonuclease, PIN domain; Nin one binding (NOB1)... | 0.14 | OrthoFinder | |
| Sro400_g135140.1 | Contig1256.g11757 | 20S-pre-rRNA D-site endonuclease NOB1 | 0.13 | OrthoFinder | |
| TP07G06410.1 | No alias | Nin one binding (NOB1) Zn-ribbon-like; Ribonuclease, PIN... | 0.06 | OrthoFinder | |
| Transcript_contig_89518 | 89518 | Ribonuclease, PIN domain; Nin one binding (NOB1)... | 0.09 | OrthoFinder | |
| Vocar.0001s0959.1 | 32884273 | Ribonuclease, PIN domain; Nin one binding (NOB1)... | 0.04 | OrthoFinder | |
| XM_002508093.1 | MICPUN_60565, 60565 | Ribonuclease, PIN domain; Nin one binding (NOB1)... | 0.06 | OrthoFinder | |
| XM_003061944.1 | MicpuC2_3608, 3608 | Nin one binding (NOB1) Zn-ribbon-like [Interproscan]. | 0.06 | OrthoFinder | |
| lcl|BLLF01000175.1_cds_GFH08649.1_3126 | HaLaN_03641, GFH08649 | Nin one binding (NOB1) Zn-ribbon-like [Interproscan]. | 0.03 | OrthoFinder | |
| lcl|LHPG02000017.1_cds_PRW33098.1_3423 | PRW33098 | 20S-pre-rRNA D-site endonuclease nob1-like | 0.12 | OrthoFinder | |
| lcl|VRMN01000007.1_cds_KAA8493449.1_9750 | KAA8493449 | 20S-pre-rRNA D-site endonuclease nob1 | 0.03 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | Enrichment |
| MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
| MF | GO:0003723 | RNA binding | IEP | Enrichment |
| MF | GO:0003724 | RNA helicase activity | IEP | Enrichment |
| MF | GO:0004386 | helicase activity | IEP | Enrichment |
| MF | GO:0004527 | exonuclease activity | IEP | Enrichment |
| MF | GO:0005488 | binding | IEP | Enrichment |
| MF | GO:0005515 | protein binding | IEP | Enrichment |
| MF | GO:0005524 | ATP binding | IEP | Enrichment |
| CC | GO:0005575 | cellular_component | IEP | Enrichment |
| CC | GO:0005634 | nucleus | IEP | Enrichment |
| CC | GO:0005730 | nucleolus | IEP | Enrichment |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0006364 | rRNA processing | IEP | Enrichment |
| BP | GO:0006396 | RNA processing | IEP | Enrichment |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Enrichment |
| MF | GO:0008094 | ATPase, acting on DNA | IEP | Enrichment |
| MF | GO:0008168 | methyltransferase activity | IEP | Enrichment |
| MF | GO:0008408 | 3'-5' exonuclease activity | IEP | Enrichment |
| BP | GO:0016070 | RNA metabolic process | IEP | Enrichment |
| BP | GO:0016072 | rRNA metabolic process | IEP | Enrichment |
| MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Enrichment |
| MF | GO:0016887 | ATPase | IEP | Enrichment |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Enrichment |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Enrichment |
| CC | GO:0030684 | preribosome | IEP | Enrichment |
| CC | GO:0032040 | small-subunit processome | IEP | Enrichment |
| BP | GO:0032259 | methylation | IEP | Enrichment |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Enrichment |
| BP | GO:0034470 | ncRNA processing | IEP | Enrichment |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Enrichment |
| BP | GO:0042254 | ribosome biogenesis | IEP | Enrichment |
| CC | GO:0043226 | organelle | IEP | Enrichment |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Enrichment |
| CC | GO:0043229 | intracellular organelle | IEP | Enrichment |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Enrichment |
| BP | GO:0044085 | cellular component biogenesis | IEP | Enrichment |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Enrichment |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | Enrichment |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
| CC | GO:0110165 | cellular anatomical entity | IEP | Enrichment |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Enrichment |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Enrichment |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR033411 | Ribonuclease_PIN | 32 | 118 |
| No external refs found! |