1. Home
  2. Species
  3. Chromochloris zofingiensis
  4. Sequence
  5. Cz06g25100.t1

Cz06g25100.t1


Description : DNA topoisomerase, type IA, zn finger; Topoisomerase C-terminal repeat; DNA topoisomerase, type IA, central; High mobility group box domain [Interproscan].


Gene families : OG_01_0003092 (OrthoFinder) Phylogenetic Tree(s): OG0003092_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz06g25100.t1
Cluster HCCA: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
Cz06g25110.t1 No alias DNA topoisomerase, type IA, central; TOPRIM domain... 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003916 DNA topoisomerase activity IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
BP GO:0006265 DNA topological change IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000339 RNA cap binding IEP Enrichment
MF GO:0000340 RNA 7-methylguanosine cap binding IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003682 chromatin binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003729 mRNA binding IEP Enrichment
MF GO:0003747 translation release factor activity IEP Enrichment
MF GO:0005319 lipid transporter activity IEP Enrichment
MF GO:0005548 phospholipid transporter activity IEP Enrichment
BP GO:0006282 regulation of DNA repair IEP Enrichment
BP GO:0006284 base-excision repair IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
BP GO:0006869 lipid transport IEP Enrichment
BP GO:0007009 plasma membrane organization IEP Enrichment
MF GO:0008079 translation termination factor activity IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0015748 organophosphate ester transport IEP Enrichment
BP GO:0015914 phospholipid transport IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Enrichment
MF GO:0017025 TBP-class protein binding IEP Enrichment
BP GO:0017121 plasma membrane phospholipid scrambling IEP Enrichment
MF GO:0017128 phospholipid scramblase activity IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
BP GO:0034204 lipid translocation IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0045332 phospholipid translocation IEP Enrichment
BP GO:0048583 regulation of response to stimulus IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
BP GO:0051052 regulation of DNA metabolic process IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
BP GO:0061024 membrane organization IEP Enrichment
BP GO:0080134 regulation of response to stress IEP Enrichment
BP GO:0080135 regulation of cellular response to stress IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0097035 regulation of membrane lipid distribution IEP Enrichment
MF GO:0140296 general transcription initiation factor binding IEP Enrichment
MF GO:0140303 intramembrane lipid transporter activity IEP Enrichment
BP GO:2001020 regulation of response to DNA damage stimulus IEP Enrichment
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 746 800
IPR025589 Toprim_C_rpt 457 509
IPR025589 Toprim_C_rpt 395 457
IPR013498 Topo_IA_Znf 318 345
IPR013497 Topo_IA_cen 1 273
No external refs found!