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  5. Cz06g21040.t1

Cz06g21040.t1


Description : Ribosomal protein L15e [Interproscan].


Gene families : OG_01_0002964 (OrthoFinder) Phylogenetic Tree(s): OG0002964_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz06g21040.t1
Cluster HCCA: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000310.75 tig00000310_g24000.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 OrthoFinder
Cre02.g091100 30785346, RPL15 Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder
Dusal.0088s00017.1 33203549 Ribosomal protein L15e [Interproscan]. 0.1 OrthoFinder
OT_02G04150.1 No alias Ribosomal protein L15e [Interproscan]. 0.08 OrthoFinder
PTI_03G02920.1 No alias Ribosomal protein L15e [Interproscan]. 0.23 OrthoFinder
Sro827_g207900.1 Contig2896.g23095 60S ribosomal protein L15 0.26 OrthoFinder
TP01G10080.1 No alias Ribosomal protein L15e [Interproscan]. 0.15 OrthoFinder
Transcript_contig_90471 90471 Ribosomal protein L15e [Interproscan]. 0.04 OrthoFinder
Vocar.0001s1207.1 32885443 Ribosomal protein L15e [Interproscan]. 0.15 OrthoFinder
XM_002507599.1 MICPUN_55312, 55312 Ribosomal protein L15e [Interproscan]. 0.23 OrthoFinder
XM_003056506.1 MicpuC2_31849, 31849 Ribosomal protein L15e [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000003.1_cds_PRW60132.1_6528 PRW60132 60S ribosomal L15 0.1 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494151.1_4015 KAA8494151 60S ribosomal protein L15 0.12 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003954 NADH dehydrogenase activity IEP Enrichment
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP Enrichment
MF GO:0004519 endonuclease activity IEP Enrichment
CC GO:0005759 mitochondrial matrix IEP Enrichment
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
CC GO:0016272 prefoldin complex IEP Enrichment
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
BP GO:0022900 electron transport chain IEP Enrichment
CC GO:0031974 membrane-enclosed lumen IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
CC GO:0043233 organelle lumen IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
CC GO:0070013 intracellular organelle lumen IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR000439 Ribosomal_L15e 18 86
No external refs found!