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  5. Cz06g12200.t1

Cz06g12200.t1


Description : Primosome PriB/single-strand DNA-binding [Interproscan].


Gene families : OG_01_0001583 (OrthoFinder) Phylogenetic Tree(s): OG0001583_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz06g12200.t1
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
Transcript_contig_54482 54482 Primosome PriB/single-strand DNA-binding [Interproscan]. 0.01 OrthoFinder
Vocar.0031s0132.1 32890048 Hypothetical protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint signaling IEP Enrichment
BP GO:0000077 DNA damage checkpoint signaling IEP Enrichment
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP Enrichment
MF GO:0004857 enzyme inhibitor activity IEP Enrichment
MF GO:0004866 endopeptidase inhibitor activity IEP Enrichment
MF GO:0004867 serine-type endopeptidase inhibitor activity IEP Enrichment
BP GO:0006284 base-excision repair IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
BP GO:0006302 double-strand break repair IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006525 arginine metabolic process IEP Enrichment
BP GO:0006527 arginine catabolic process IEP Enrichment
BP GO:0006729 tetrahydrobiopterin biosynthetic process IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
MF GO:0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0008483 transaminase activity IEP Enrichment
MF GO:0008792 arginine decarboxylase activity IEP Enrichment
BP GO:0009063 cellular amino acid catabolic process IEP Enrichment
BP GO:0009064 glutamine family amino acid metabolic process IEP Enrichment
BP GO:0009065 glutamine family amino acid catabolic process IEP Enrichment
BP GO:0009611 response to wounding IEP Enrichment
BP GO:0010564 regulation of cell cycle process IEP Enrichment
BP GO:0010948 negative regulation of cell cycle process IEP Enrichment
BP GO:0016054 organic acid catabolic process IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Enrichment
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Enrichment
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Enrichment
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Enrichment
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Enrichment
MF GO:0030414 peptidase inhibitor activity IEP Enrichment
CC GO:0030896 checkpoint clamp complex IEP Enrichment
BP GO:0031570 DNA integrity checkpoint signaling IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
BP GO:0034311 diol metabolic process IEP Enrichment
BP GO:0034312 diol biosynthetic process IEP Enrichment
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Enrichment
BP GO:0042770 signal transduction in response to DNA damage IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
MF GO:0043531 ADP binding IEP Enrichment
BP GO:0045786 negative regulation of cell cycle IEP Enrichment
BP GO:0046146 tetrahydrobiopterin metabolic process IEP Enrichment
BP GO:0046165 alcohol biosynthetic process IEP Enrichment
BP GO:0046173 polyol biosynthetic process IEP Enrichment
BP GO:0046395 carboxylic acid catabolic process IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
MF GO:0051287 NAD binding IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0051726 regulation of cell cycle IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
MF GO:0061134 peptidase regulator activity IEP Enrichment
MF GO:0061135 endopeptidase regulator activity IEP Enrichment
BP GO:1901565 organonitrogen compound catabolic process IEP Enrichment
BP GO:1901606 alpha-amino acid catabolic process IEP Enrichment
BP GO:1901987 regulation of cell cycle phase transition IEP Enrichment
BP GO:1901988 negative regulation of cell cycle phase transition IEP Enrichment
InterPro domains Description Start Stop
IPR000424 Primosome_PriB/ssb 84 176
No external refs found!