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  5. Cz06g11170.t1

Cz06g11170.t1


Description : Retrotransposon gag domain; Zinc finger, CCHC-type [Interproscan].


Gene families : OG_01_0011346 (OrthoFinder) Phylogenetic Tree(s): OG0011346_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz06g11170.t1
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
Cz09g23150.t1 No alias Retrotransposon gag domain; Zinc finger, CCHC-type... 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP Enrichment
BP GO:0006066 alcohol metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
BP GO:0042180 cellular ketone metabolic process IEP Enrichment
BP GO:0042181 ketone biosynthetic process IEP Enrichment
BP GO:0045149 acetoin metabolic process IEP Enrichment
BP GO:0045151 acetoin biosynthetic process IEP Enrichment
BP GO:0046165 alcohol biosynthetic process IEP Enrichment
MF GO:0047605 acetolactate decarboxylase activity IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:1901615 organic hydroxy compound metabolic process IEP Enrichment
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Enrichment
BP GO:1902652 secondary alcohol metabolic process IEP Enrichment
BP GO:1902653 secondary alcohol biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 117 216
IPR001878 Znf_CCHC 281 295
No external refs found!