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  5. Cpa|evm.model.tig00001027.29

Cpa|evm.model.tig00001027.29 (tig00001027_g6401.t1)


Aliases : tig00001027_g6401.t1

Description : DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis thaliana


Gene families : OG_01_0003754 (OrthoFinder) Phylogenetic Tree(s): OG0003754_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001027.29
Cluster HCCA: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
Cre07.g319750 30775315 DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis thaliana 0.02 OrthoFinder
Transcript_contig_55061 55061 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 302 375
IPR011545 DEAD/DEAH_box_helicase_dom 144 229
No external refs found!