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  5. Cz06g08020.t1

Cz06g08020.t1


Description : RNA recognition motif domain [Interproscan].


Gene families : OG_01_0002944 (OrthoFinder) Phylogenetic Tree(s): OG0002944_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz06g08020.t1
Cluster HCCA: Cluster_97

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000857.20 tig00000857_g4946.t1 RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder
Cpa|evm.model.tig00021531.8 tig00021531_g22171.t1 RNA processing.RNA splicing.spliceosome-associated... 0.01 OrthoFinder
Cre06.g278239 30779801 RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder
Vocar.0001s0908.1 32884934 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Vocar.0002s0293.1 32891004 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0004470 malic enzyme activity IEP Enrichment
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Enrichment
CC GO:0005681 spliceosomal complex IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006334 nucleosome assembly IEP Enrichment
BP GO:0006383 transcription by RNA polymerase III IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
MF GO:0016615 malate dehydrogenase activity IEP Enrichment
MF GO:0019955 cytokine binding IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
BP GO:0022618 ribonucleoprotein complex assembly IEP Enrichment
MF GO:0030145 manganese ion binding IEP Enrichment
CC GO:0030173 integral component of Golgi membrane IEP Enrichment
MF GO:0031072 heat shock protein binding IEP Enrichment
CC GO:0031228 intrinsic component of Golgi membrane IEP Enrichment
CC GO:0031300 intrinsic component of organelle membrane IEP Enrichment
CC GO:0031301 integral component of organelle membrane IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
MF GO:0042393 histone binding IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
BP GO:0065004 protein-DNA complex assembly IEP Enrichment
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 7 75
IPR000504 RRM_dom 131 193
No external refs found!