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  5. Cz06g02160.t1

Cz06g02160.t1


Description : Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain; Anticodon-binding [Interproscan].


Gene families : OG_01_0000761 (OrthoFinder) Phylogenetic Tree(s): OG0000761_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz06g02160.t1
Cluster HCCA: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
Cre02.g142352 30785235 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.04 OrthoFinder
Cz11g27130.t1 No alias Aromatic amino acid lyase; Class II Histidinyl-tRNA... 0.02 OrthoFinder
Dusal.0128s00025.1 33185280 Class II Histidinyl-tRNA synthetase (HisRS)-like... 0.03 OrthoFinder
Dusal.0387s00008.1 33202112 Anticodon-binding; Class II Histidinyl-tRNA synthetase... 0.02 OrthoFinder
OT_11G03340.1 No alias Anticodon-binding; Class II Histidinyl-tRNA synthetase... 0.02 OrthoFinder
OT_14G01170.1 No alias Anticodon-binding; Class II Histidinyl-tRNA synthetase... 0.03 OrthoFinder
Sro390_g132850.1 Contig4620.g34474 Histidine--tRNA ligase 0.02 OrthoFinder
Transcript_contig_54149 54149 Anticodon-binding; Aromatic amino acid lyase; Class II... 0.03 OrthoFinder
Vocar.0008s0027.1 32897129 Anticodon-binding; Class II Histidinyl-tRNA synthetase... 0.02 OrthoFinder
XM_002505547.1 MICPUN_92337, 92337 Anticodon-binding; Class II Histidinyl-tRNA synthetase... 0.03 OrthoFinder
XM_002509125.1 MICPUN_68035, 68035 Anticodon-binding; Class II Histidinyl-tRNA synthetase... 0.04 OrthoFinder
XM_003061537.1 MicpuC2_48335, 48335 Anticodon-binding; Class II Histidinyl-tRNA synthetase... 0.03 OrthoFinder
XM_003063659.1 MicpuC2_36675, 36675 Anticodon-binding; Class II Histidinyl-tRNA synthetase... 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003747 translation release factor activity IEP Enrichment
MF GO:0003855 3-dehydroquinate dehydratase activity IEP Enrichment
MF GO:0004107 chorismate synthase activity IEP Enrichment
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP Enrichment
MF GO:0004832 valine-tRNA ligase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
CC GO:0005672 transcription factor TFIIA complex IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
BP GO:0006438 valyl-tRNA aminoacylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008079 translation termination factor activity IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0009072 aromatic amino acid family metabolic process IEP Enrichment
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP Enrichment
MF GO:0016829 lyase activity IEP Enrichment
MF GO:0016835 carbon-oxygen lyase activity IEP Enrichment
MF GO:0016836 hydro-lyase activity IEP Enrichment
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019725 cellular homeostasis IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
BP GO:0030163 protein catabolic process IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
BP GO:0042592 homeostatic process IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0045454 cell redox homeostasis IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901565 organonitrogen compound catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR041715 HisRS-like_core 88 393
IPR004154 Anticodon-bd 420 501
No external refs found!