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  5. Cz05g29200.t1

Cz05g29200.t1


Description : PLAT/LH2 domain [Interproscan].


Gene families : OG_01_0000226 (OrthoFinder) Phylogenetic Tree(s): OG0000226_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz05g29200.t1
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
EOD37867 No alias PPM-type phosphatase domain; CBS domain [Interproscan]. 0.03 OrthoFinder
TP08G01350.1 No alias PPM-type phosphatase domain [Interproscan]. 0.02 OrthoFinder
Transcript_contig_89520 89520 PPM-type phosphatase domain [Interproscan]. 0.01 OrthoFinder
Vocar.0001s0758.1 32884587 PPM-type phosphatase domain; PLAT/LH2 domain [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000135.1_cds_GFH08068.1_2545 HaLaN_02972, GFH08068 Protein phosphatase 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Enrichment
CC GO:0005681 spliceosomal complex IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0009975 cyclase activity IEP Enrichment
MF GO:0009976 tocopherol cyclase activity IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Enrichment
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Enrichment
MF GO:0071949 FAD binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001024 PLAT/LH2_dom 77 184
No external refs found!