Cz05g27090.t1

Description : Peptide chain release factor; Peptide chain release factor class I [Interproscan].

Gene families : OG_01_0002640 (OrthoFinder) Phylogenetic Tree(s): OG0002640_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cz05g27090.t1
Cluster	HCCA: Cluster_97

Target	Alias	Description	ECC score	Gene Family Method	Actions
SymbC1.scaffold379.5	379.5	Peptide chain release factor class I [Interproscan].	0.01	OrthoFinder
Transcript_contig_89486	89486	Peptide chain release factor class I; Peptide chain...	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003747	translation release factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006415	translational termination	IEA	Interproscan
MF	GO:0008079	translation termination factor activity	None	Extended
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022411	cellular component disassembly	None	Extended
BP	GO:0032984	protein-containing complex disassembly	None	Extended
BP	GO:0043624	cellular protein complex disassembly	None	Extended
BP	GO:0043933	protein-containing complex subunit organization	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000350	generation of catalytic spliceosome for second transesterification step	IEP	Enrichment
BP	GO:0001510	RNA methylation	IEP	Enrichment
MF	GO:0003743	translation initiation factor activity	IEP	Enrichment
CC	GO:0005575	cellular_component	IEP	Enrichment
CC	GO:0005634	nucleus	IEP	Enrichment
CC	GO:0005643	nuclear pore	IEP	Enrichment
CC	GO:0005672	transcription factor TFIIA complex	IEP	Enrichment
CC	GO:0005739	mitochondrion	IEP	Enrichment
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Enrichment
BP	GO:0006325	chromatin organization	IEP	Enrichment
BP	GO:0006334	nucleosome assembly	IEP	Enrichment
BP	GO:0006352	DNA-templated transcription, initiation	IEP	Enrichment
BP	GO:0006354	DNA-templated transcription, elongation	IEP	Enrichment
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Enrichment
BP	GO:0006367	transcription initiation from RNA polymerase II promoter	IEP	Enrichment
BP	GO:0006368	transcription elongation from RNA polymerase II promoter	IEP	Enrichment
BP	GO:0006383	transcription by RNA polymerase III	IEP	Enrichment
BP	GO:0006396	RNA processing	IEP	Enrichment
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Enrichment
BP	GO:0006891	intra-Golgi vesicle-mediated transport	IEP	Enrichment
CC	GO:0008023	transcription elongation factor complex	IEP	Enrichment
BP	GO:0009059	macromolecule biosynthetic process	IEP	Enrichment
BP	GO:0009451	RNA modification	IEP	Enrichment
BP	GO:0009890	negative regulation of biosynthetic process	IEP	Enrichment
BP	GO:0009891	positive regulation of biosynthetic process	IEP	Enrichment
BP	GO:0009893	positive regulation of metabolic process	IEP	Enrichment
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Enrichment
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	Enrichment
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Enrichment
BP	GO:0016070	RNA metabolic process	IEP	Enrichment
BP	GO:0016071	mRNA metabolic process	IEP	Enrichment
BP	GO:0016556	mRNA modification	IEP	Enrichment
BP	GO:0016569	covalent chromatin modification	IEP	Enrichment
BP	GO:0016570	histone modification	IEP	Enrichment
CC	GO:0016593	Cdc73/Paf1 complex	IEP	Enrichment
BP	GO:0018130	heterocycle biosynthetic process	IEP	Enrichment
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Enrichment
BP	GO:0022607	cellular component assembly	IEP	Enrichment
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	Enrichment
CC	GO:0030173	integral component of Golgi membrane	IEP	Enrichment
MF	GO:0031072	heat shock protein binding	IEP	Enrichment
CC	GO:0031228	intrinsic component of Golgi membrane	IEP	Enrichment
CC	GO:0031300	intrinsic component of organelle membrane	IEP	Enrichment
CC	GO:0031301	integral component of organelle membrane	IEP	Enrichment
BP	GO:0031324	negative regulation of cellular metabolic process	IEP	Enrichment
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Enrichment
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	Enrichment
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Enrichment
BP	GO:0032774	RNA biosynthetic process	IEP	Enrichment
BP	GO:0032784	regulation of DNA-templated transcription, elongation	IEP	Enrichment
BP	GO:0032786	positive regulation of DNA-templated transcription, elongation	IEP	Enrichment
BP	GO:0032968	positive regulation of transcription elongation from RNA polymerase II promoter	IEP	Enrichment
BP	GO:0034243	regulation of transcription elongation from RNA polymerase II promoter	IEP	Enrichment
BP	GO:0034622	cellular protein-containing complex assembly	IEP	Enrichment
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Enrichment
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Enrichment
CC	GO:0043226	organelle	IEP	Enrichment
CC	GO:0043227	membrane-bounded organelle	IEP	Enrichment
CC	GO:0043229	intracellular organelle	IEP	Enrichment
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Enrichment
BP	GO:0043414	macromolecule methylation	IEP	Enrichment
BP	GO:0043647	inositol phosphate metabolic process	IEP	Enrichment
BP	GO:0045892	negative regulation of transcription, DNA-templated	IEP	Enrichment
BP	GO:0045893	positive regulation of transcription, DNA-templated	IEP	Enrichment
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	IEP	Enrichment
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	Enrichment
BP	GO:0045944	positive regulation of transcription by RNA polymerase II	IEP	Enrichment
BP	GO:0046164	alcohol catabolic process	IEP	Enrichment
BP	GO:0046174	polyol catabolic process	IEP	Enrichment
BP	GO:0046483	heterocycle metabolic process	IEP	Enrichment
BP	GO:0046838	phosphorylated carbohydrate dephosphorylation	IEP	Enrichment
BP	GO:0046855	inositol phosphate dephosphorylation	IEP	Enrichment
BP	GO:0048518	positive regulation of biological process	IEP	Enrichment
BP	GO:0048522	positive regulation of cellular process	IEP	Enrichment
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	IEP	Enrichment
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Enrichment
BP	GO:0051253	negative regulation of RNA metabolic process	IEP	Enrichment
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	Enrichment
MF	GO:0051539	4 iron, 4 sulfur cluster binding	IEP	Enrichment
BP	GO:0065003	protein-containing complex assembly	IEP	Enrichment
BP	GO:0065004	protein-DNA complex assembly	IEP	Enrichment
BP	GO:0071545	inositol phosphate catabolic process	IEP	Enrichment
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	Enrichment
BP	GO:0080009	mRNA methylation	IEP	Enrichment
BP	GO:0090304	nucleic acid metabolic process	IEP	Enrichment
CC	GO:0090575	RNA polymerase II transcription regulator complex	IEP	Enrichment
CC	GO:0140513	nuclear protein-containing complex	IEP	Enrichment
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Enrichment
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Enrichment
BP	GO:1901616	organic hydroxy compound catabolic process	IEP	Enrichment
BP	GO:1902679	negative regulation of RNA biosynthetic process	IEP	Enrichment
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	Enrichment
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	IEP	Enrichment
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	Enrichment
BP	GO:2000113	negative regulation of cellular macromolecule biosynthetic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR005139	PCRF	2	169
IPR000352	Pep_chain_release_fac_I	182	289

External Links

No external refs found!

Cz05g27090.t1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation