1. Home
  2. Species
  3. Chromochloris zofingiensis
  4. Sequence
  5. Cz05g24240.t1

Cz05g24240.t1


Description : SNF2-related, N-terminal domain; Helicase, C-terminal [Interproscan].


Gene families : OG_01_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz05g24240.t1
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
Cre03.g179300 30786668 RNA biosynthesis.RNA polymerase II-dependent... 0.03 OrthoFinder
Cre08.g377200 30773522 CHD3-type chromatin-remodeling factor PICKLE... 0.02 OrthoFinder
Cz07g13180.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.04 OrthoFinder
Dusal.0024s00040.1 33202173 SNF2-related, N-terminal domain [Interproscan]. 0.02 OrthoFinder
Dusal.0280s00012.1 33203409 SNF2-related, N-terminal domain [Interproscan]. 0.03 OrthoFinder
EOD23118 No alias SNF2-related, N-terminal domain [Interproscan]. 0.02 OrthoFinder
EOD27153 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
EOD34138 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.02 OrthoFinder
EOD36957 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
PTI_02G06230.1 No alias Bromodomain; Helicase, C-terminal; Snf2, ATP coupling... 0.02 OrthoFinder
Transcript_contig_67487 67487 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
Vocar.0016s0256.1 32897896 SLIDE domain; ISWI, HAND domain; Helicase, C-terminal;... 0.02 OrthoFinder
Vocar.0032s0115.1 32893725 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
XM_002502289.1 MICPUN_58978, 58978 SNF2 super family 0.03 OrthoFinder
XM_003061313.1 MicpuC2_50939, 50939 SNF2 super family 0.03 OrthoFinder
XM_003061952.1 MicpuC2_51787, 51787 SNF2 super family 0.04 OrthoFinder
XM_003064054.1 MicpuC2_54122, 54122 SNF2 super family 0.02 OrthoFinder
lcl|BLLF01000629.1_cds_GFH13581.1_8058 HaLaN_09499, GFH13581 SNF2-related, N-terminal domain [Interproscan]. 0.03 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60864.1_4118 PRW60864 SNF2 super family 0.02 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56740.1_9705 PRW56740 Chromatin-remodeling complex ATPase chain 0.02 OrthoFinder
lcl|LHPG02000013.1_cds_PRW44381.1_2263 PRW44381 Chromodomain-helicase-DNA-binding 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
MF GO:0030145 manganese ion binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR000330 SNF2_N 736 1034
IPR001650 Helicase_C 1058 1173
No external refs found!