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  5. Cz05g18190.t1

Cz05g18190.t1


Description : 60s Acidic ribosomal protein; Ribosomal protein L10P; 60S ribosomal protein L10P, insertion domain [Interproscan].


Gene families : OG_01_0003829 (OrthoFinder) Phylogenetic Tree(s): OG0003829_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz05g18190.t1
Cluster HCCA: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000615.69 tig00000615_g2599.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.24 OrthoFinder
Cre12.g520500 30793097, RPP0 Protein biosynthesis.cytosolic ribosome.large subunit... 0.31 OrthoFinder
Dusal.0545s00010.1 33199351 60S ribosomal protein L10P, insertion domain; 60s Acidic... 0.22 OrthoFinder
EOD31633 No alias Ribosomal protein L10P; 60S ribosomal protein L10P,... 0.21 OrthoFinder
EOD32270 No alias Ribosomal protein L10P [Interproscan]. 0.04 OrthoFinder
OT_14G00140.1 No alias Ribosomal protein L10P; 60S ribosomal protein L10P,... 0.12 OrthoFinder
PTI_24G01760.1 No alias 60S ribosomal protein L10P, insertion domain; Ribosomal... 0.21 OrthoFinder
Sro5_g004490.1 Contig4001.g30764 Acidic ribosomal protein P0 0.26 OrthoFinder
Vocar.0037s0115.1 32897611 60S ribosomal protein L10P, insertion domain; 60s Acidic... 0.16 OrthoFinder
XM_002505537.1 MICPUN_92321, 92321 60s Acidic ribosomal protein; Ribosomal protein L10P;... 0.09 OrthoFinder
XM_003063650.1 MicpuC2_48999, 48999 60S ribosomal protein L10P, insertion domain; Ribosomal... 0.1 OrthoFinder
lcl|BLLF01002313.1_cds_GFH23608.1_18085 HaLaN_21243, GFH23608 60S acidic ribosomal protein P0 0.03 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56663.1_9798 PRW56663 60S acidic ribosomal P0 0.14 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492277.1_5460 KAA8492277 60S acidic ribosomal protein P0 0.07 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0042254 ribosome biogenesis IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0004520 endodeoxyribonuclease activity IEP Enrichment
MF GO:0004531 deoxyribonuclease II activity IEP Enrichment
MF GO:0004536 deoxyribonuclease activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0016889 endodeoxyribonuclease activity, producing 3'-phosphomonoesters IEP Enrichment
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR040637 RL10P_insert 113 182
IPR001790 Ribosomal_L10P 7 107
No external refs found!