1. Home
  2. Species
  3. Chromochloris zofingiensis
  4. Sequence
  5. Cz05g15140.t1

Cz05g15140.t1


Description : WD40 repeat; Histone-binding protein RBBP4, N-terminal [Interproscan].


Gene families : OG_01_0003117 (OrthoFinder) Phylogenetic Tree(s): OG0003117_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz05g15140.t1
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000808.15 tig00000808_g4401.t1 Chromatin organisation.histone chaperone activities.CAF1... 0.02 OrthoFinder
Cre12.g523200 30792941 Chromatin organisation.histone modifications.histone... 0.04 OrthoFinder
EOD14772 No alias Histone-binding protein RBBP4, N-terminal; WD40 repeat... 0.01 OrthoFinder
OT_12G00120.1 No alias Histone-binding protein RBBP4, N-terminal; WD40 repeat;... 0.02 OrthoFinder
Sro1_g000700.1 Contig3007.g23985 Probable histone-binding protein lin-53 0.03 OrthoFinder
Vocar.0006s0459.1 32894188 WD40 repeat; Histone-binding protein RBBP4, N-terminal... 0.02 OrthoFinder
XM_002504862.1 MICPUN_86547, 86547 NURF complex component 0.04 OrthoFinder
XM_003060655.1 MicpuC2_49651, 49651 NURF complex component 0.03 OrthoFinder
lcl|BLLF01001650.1_cds_GFH20512.1_14989 HaLaN_17649, GFH20512 WD-40 repeat-containing protein MSI1 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IEP Enrichment
MF GO:0004298 threonine-type endopeptidase activity IEP Enrichment
MF GO:0004379 glycylpeptide N-tetradecanoyltransferase activity IEP Enrichment
MF GO:0004576 oligosaccharyl transferase activity IEP Enrichment
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
MF GO:0005337 nucleoside transmembrane transporter activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005789 endoplasmic reticulum membrane IEP Enrichment
CC GO:0005839 proteasome core complex IEP Enrichment
BP GO:0006275 regulation of DNA replication IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
BP GO:0006487 protein N-linked glycosylation IEP Enrichment
BP GO:0007062 sister chromatid cohesion IEP Enrichment
BP GO:0007064 mitotic sister chromatid cohesion IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0009894 regulation of catabolic process IEP Enrichment
BP GO:0015858 nucleoside transport IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Enrichment
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Enrichment
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Enrichment
BP GO:0018193 peptidyl-amino acid modification IEP Enrichment
BP GO:0018196 peptidyl-asparagine modification IEP Enrichment
BP GO:0018279 protein N-linked glycosylation via asparagine IEP Enrichment
MF GO:0019107 myristoyltransferase activity IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
CC GO:0031090 organelle membrane IEP Enrichment
CC GO:0031390 Ctf18 RFC-like complex IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0035145 exon-exon junction complex IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0042176 regulation of protein catabolic process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0043413 macromolecule glycosylation IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
MF GO:0070003 threonine-type peptidase activity IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
BP GO:1901264 carbohydrate derivative transport IEP Enrichment
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Enrichment
BP GO:1901642 nucleoside transmembrane transport IEP Enrichment
BP GO:1903047 mitotic cell cycle process IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
CC GO:1905369 endopeptidase complex IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 369 401
IPR001680 WD40_repeat 310 348
IPR001680 WD40_repeat 273 302
IPR022052 Histone-bd_RBBP4_N 20 89
No external refs found!