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  5. Cz05g13020.t1

Cz05g13020.t1


Description : Ribosomal Proteins L2, RNA binding domain; Ribosomal protein L2, C-terminal [Interproscan].


Gene families : OG_01_0003494 (OrthoFinder) Phylogenetic Tree(s): OG0003494_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz05g13020.t1
Cluster HCCA: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020965.22 tig00020965_g16838.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 OrthoFinder
Cre12.g535851 30793369 Protein biosynthesis.cytosolic ribosome.large subunit... 0.18 OrthoFinder
Dusal.0446s00012.1 33201126 Ribosomal protein L2, C-terminal; Ribosomal Proteins L2,... 0.13 OrthoFinder
EOD38182 No alias Ribosomal Proteins L2, RNA binding domain; Ribosomal... 0.14 OrthoFinder
OT_04G01870.1 No alias Ribosomal Proteins L2, RNA binding domain; Ribosomal... 0.13 OrthoFinder
PTI_11G02510.1 No alias Ribosomal Proteins L2, RNA binding domain; Ribosomal... 0.2 OrthoFinder
Sro1384_g268110.1 Contig2234.g18573 60S ribosomal protein L8 0.2 OrthoFinder
TP14G02630.1 No alias Ribosomal protein L2, C-terminal; Ribosomal Proteins L2,... 0.15 OrthoFinder
Vocar.0043s0070.1 32886882 Ribosomal protein L2, C-terminal; Ribosomal Proteins L2,... 0.06 OrthoFinder
XM_002504886.1 MICPUN_95460, 95460 Ribosomal Proteins L2, RNA binding domain; Ribosomal... 0.17 OrthoFinder
XM_003060635.1 MicpuC2_49650, 49650 Ribosomal Proteins L2, RNA binding domain; Ribosomal... 0.09 OrthoFinder
lcl|BLLF01003547.1_cds_GFH27617.1_22094 HaLaN_25972, GFH27617 Ribosomal_L2_C domain-containing protein 0.03 OrthoFinder
lcl|LHPG02000012.1_cds_PRW45027.1_1889 PRW45027 60S ribosomal L8 0.09 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494059.1_3923 KAA8494059 60S ribosomal protein L8 0.12 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004017 adenylate kinase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005759 mitochondrial matrix IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
CC GO:0016272 prefoldin complex IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Enrichment
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Enrichment
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Enrichment
MF GO:0019205 nucleobase-containing compound kinase activity IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
CC GO:0031974 membrane-enclosed lumen IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0033897 ribonuclease T2 activity IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
CC GO:0043233 organelle lumen IEP Enrichment
MF GO:0050145 nucleoside monophosphate kinase activity IEP Enrichment
CC GO:0070013 intracellular organelle lumen IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
InterPro domains Description Start Stop
IPR022669 Ribosomal_L2_C 163 293
IPR022666 Rbsml_prot_L2_RNA-bd_dom 76 155
No external refs found!