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  5. Cz05g10130.t1

Cz05g10130.t1


Description : Reverse transcriptase, RNA-dependent DNA polymerase; Integrase, catalytic core [Interproscan].


Gene families : OG_01_0000023 (OrthoFinder) Phylogenetic Tree(s): OG0000023_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz05g10130.t1
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
Cz01g34080.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.02 OrthoFinder
Cz01g34090.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.01 OrthoFinder
Cz01g34150.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.07 OrthoFinder
Cz01g34170.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.04 OrthoFinder
Cz02g21030.t1 No alias gag-polypeptide of LTR copia-type; Zinc finger,... 0.03 OrthoFinder
Cz02g21050.t1 No alias gag-polypeptide of LTR copia-type [Interproscan]. 0.03 OrthoFinder
Cz02g21060.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.06 OrthoFinder
Cz02g21080.t1 No alias GAG-pre-integrase domain; Integrase, catalytic core... 0.01 OrthoFinder
Cz02g21170.t1 No alias Integrase, catalytic core [Interproscan]. 0.03 OrthoFinder
Cz02g21220.t1 No alias Integrase, catalytic core; Reverse transcriptase,... 0.06 OrthoFinder
Cz02g21230.t1 No alias Ribonuclease H domain [Interproscan]. 0.03 OrthoFinder
Cz02g21290.t1 No alias Hypothetical protein 0.02 OrthoFinder
Cz03g25140.t1 No alias Ribonuclease H domain [Interproscan]. 0.04 OrthoFinder
Cz03g25170.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.03 OrthoFinder
Cz03g25180.t1 No alias Hypothetical protein 0.01 OrthoFinder
Cz03g25190.t1 No alias Hypothetical protein 0.01 OrthoFinder
Cz03g25200.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.05 OrthoFinder
Cz04g09130.t1 No alias Hypothetical protein 0.03 OrthoFinder
Cz12g13180.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.05 OrthoFinder
Cz14g04110.t1 No alias GAG-pre-integrase domain; Integrase, catalytic core... 0.06 OrthoFinder
Cz16g05060.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.01 OrthoFinder
Cz16g05080.t1 No alias gag-polypeptide of LTR copia-type; Zinc finger,... 0.01 OrthoFinder
Cz17g17250.t1 No alias Hypothetical protein 0.04 OrthoFinder
UNPLg00551.t1 No alias Hypothetical protein 0.03 OrthoFinder
UNPLg00686.t1 No alias Hypothetical protein 0.02 OrthoFinder
UNPLg00808.t1 No alias Hypothetical protein 0.03 OrthoFinder
UNPLg00814.t1 No alias Hypothetical protein 0.02 OrthoFinder
UNPLg00843.t1 No alias Hypothetical protein 0.02 OrthoFinder
UNPLg00866.t1 No alias Hypothetical protein 0.02 OrthoFinder
UNPLg00888.t1 No alias Hypothetical protein 0.03 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499574.1_8527 KAA8499574 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499576.1_8529 KAA8499576 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.02 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492487.1_9180 KAA8492487 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.02 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492347.1_5530 KAA8492347 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.02 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491886.1_4894 KAA8491886 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.02 OrthoFinder
lcl|VRMN01000020.1_cds_KAA8490649.1_4691 KAA8490649 Hypothetical protein 0.01 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR013103 RVT_2 373 613
IPR001584 Integrase_cat-core 1 109
No external refs found!