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Aliases : tig00001003_g6291.t1
Description : Ribosome production factor 2 homolog OS=Arabidopsis thaliana
Gene families : OG_01_0002998 (OrthoFinder) Phylogenetic Tree(s): OG0002998_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cpa|evm.model.tig00001003.36 | |
| Cluster | HCCA: Cluster_95 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cre03.g197000 | 30787867 | Ribosome production factor 2 homolog OS=Arabidopsis thaliana | 0.06 | OrthoFinder | |
| Cz01g37260.t1 | No alias | Brix domain [Interproscan]. | 0.06 | OrthoFinder | |
| EOD30893 | No alias | Brix domain [Interproscan]. | 0.03 | OrthoFinder | |
| OT_17G01690.1 | No alias | Brix domain [Interproscan]. | 0.06 | OrthoFinder | |
| PTI_06G01690.1 | No alias | Brix domain [Interproscan]. | 0.07 | OrthoFinder | |
| Sro545_g163870.1 | Contig1180.g11230 | Production factor 2 homolog | 0.03 | OrthoFinder | |
| TP03G03260.1 | No alias | Brix domain [Interproscan]. | 0.04 | OrthoFinder | |
| Transcript_contig_82014 | 82014 | Brix domain [Interproscan]. | 0.02 | OrthoFinder | |
| Vocar.0011s0309.1 | 32895454 | Brix domain [Interproscan]. | 0.01 | OrthoFinder | |
| XM_002506064.1 | MICPUN_70830, 70830 | Brix domain [Interproscan]. | 0.07 | OrthoFinder | |
| XM_003056730.1 | MicpuC2_5469, 5469 | Brix domain [Interproscan]. | 0.08 | OrthoFinder | |
| lcl|VRMN01000002.1_cds_KAA8497175.1_904 | KAA8497175 | Ribosome production factor 2-like | 0.04 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | Enrichment |
| MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
| MF | GO:0003723 | RNA binding | IEP | Enrichment |
| MF | GO:0003747 | translation release factor activity | IEP | Enrichment |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Enrichment |
| MF | GO:0004674 | protein serine/threonine kinase activity | IEP | Enrichment |
| MF | GO:0005488 | binding | IEP | Enrichment |
| MF | GO:0005515 | protein binding | IEP | Enrichment |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0006351 | transcription, DNA-templated | IEP | Enrichment |
| BP | GO:0006364 | rRNA processing | IEP | Enrichment |
| BP | GO:0006396 | RNA processing | IEP | Enrichment |
| BP | GO:0006400 | tRNA modification | IEP | Enrichment |
| BP | GO:0006415 | translational termination | IEP | Enrichment |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Enrichment |
| MF | GO:0008079 | translation termination factor activity | IEP | Enrichment |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0016070 | RNA metabolic process | IEP | Enrichment |
| BP | GO:0016072 | rRNA metabolic process | IEP | Enrichment |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | Enrichment |
| BP | GO:0022411 | cellular component disassembly | IEP | Enrichment |
| BP | GO:0032774 | RNA biosynthetic process | IEP | Enrichment |
| BP | GO:0032984 | protein-containing complex disassembly | IEP | Enrichment |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Enrichment |
| BP | GO:0034470 | ncRNA processing | IEP | Enrichment |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Enrichment |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0043624 | cellular protein complex disassembly | IEP | Enrichment |
| BP | GO:0043933 | protein-containing complex subunit organization | IEP | Enrichment |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Enrichment |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | Enrichment |
| MF | GO:0097747 | RNA polymerase activity | IEP | Enrichment |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Enrichment |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Enrichment |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR007109 | Brix | 41 | 147 |
| No external refs found! |