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  5. Cpa|evm.model.tig00001003.33

Cpa|evm.model.tig00001003.33 (tig00001003_g6288.t1)


Aliases : tig00001003_g6288.t1

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS30 component


Gene families : OG_01_0004587 (OrthoFinder) Phylogenetic Tree(s): OG0004587_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001003.33
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
Cre16.g666301 30777782, RPS30 Protein biosynthesis.cytosolic ribosome.small subunit... 0.25 OrthoFinder
EOD14554 No alias Ribosomal protein S30 [Interproscan]. 0.02 OrthoFinder
EOD23777 No alias Ribosomal protein S30 [Interproscan]. 0.02 OrthoFinder
OT_08G00570.1 No alias Ribosomal protein S30 [Interproscan]. 0.12 OrthoFinder
PTI_04G04400.1 No alias Ribosomal protein S30 [Interproscan]. 0.28 OrthoFinder
Sro1093_g240360.1 Contig384.g5162 40S ribosomal protein S30 0.32 OrthoFinder
TP01G05720.1 No alias Ribosomal protein S30 [Interproscan]. 0.08 OrthoFinder
Vocar.0066s0009.1 32891752 Ribosomal protein S30 [Interproscan]. 0.02 OrthoFinder
XM_002502986.1 MICPUN_59642, 59642 Ribosomal protein S30; Ribosomal protein S15 [Interproscan]. 0.28 OrthoFinder
XM_003058671.1 MicpuC2_57777, 57777 Ribosomal protein 0.09 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR000626 Ubiquitin-like_dom 4 62
IPR006846 Ribosomal_S30 70 127
No external refs found!