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  5. Cz04g32230.t1

Cz04g32230.t1


Description : Ribosomal protein S16 [Interproscan].


Gene families : OG_01_0001483 (OrthoFinder) Phylogenetic Tree(s): OG0001483_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz04g32230.t1
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
Cre12.g494450 30791769, PRPS16 30S ribosomal protein S16, chloroplastic OS=Staurastrum... 0.28 OrthoFinder
Dusal.0140s00006.1 33196367 Ribosomal protein S16 [Interproscan]. 0.06 OrthoFinder
OT_16G01850.1 No alias Ribosomal protein S16 [Interproscan]. 0.12 OrthoFinder
Sro133_g063150.1 Contig2274.g18874 Protein S16 0.03 OrthoFinder
Sro51_chlor_g029400.1 Rps16 Rps16 0.01 OrthoFinder
SymbC1.scaffold2820.1 2820.1 Ribosomal protein S16 [Interproscan]. 0.02 OrthoFinder
TPCG02150.1 No alias Ribosomal protein S16 [Interproscan]. 0.04 OrthoFinder
Vocar.0031s0013.1 32890135 Ribosomal protein S16 [Interproscan]. 0.06 OrthoFinder
XM_002506300.1 MICPUN_64421, 64421 Ribosomal protein S16 [Interproscan]. 0.19 OrthoFinder
XM_003063439.1 MicpuC2_48856, 48856 Ribosomal protein S16 [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000004.1_cds_GFH05648.1_125 HaLaN_00147, GFH05648 Ribosomal protein S16 [Interproscan]. 0.01 OrthoFinder
lcl|BLLF01000122.1_cds_GFH07884.1_2361 HaLaN_02753, GFH07884 Ribosomal protein S16 [Interproscan]. 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0003879 ATP phosphoribosyltransferase activity IEP Enrichment
MF GO:0004014 adenosylmethionine decarboxylase activity IEP Enrichment
MF GO:0004329 formate-tetrahydrofolate ligase activity IEP Enrichment
MF GO:0004618 phosphoglycerate kinase activity IEP Enrichment
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
BP GO:0006091 generation of precursor metabolites and energy IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006547 histidine metabolic process IEP Enrichment
BP GO:0006576 cellular biogenic amine metabolic process IEP Enrichment
BP GO:0006595 polyamine metabolic process IEP Enrichment
BP GO:0006596 polyamine biosynthetic process IEP Enrichment
BP GO:0006597 spermine biosynthetic process IEP Enrichment
BP GO:0006729 tetrahydrobiopterin biosynthetic process IEP Enrichment
MF GO:0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity IEP Enrichment
BP GO:0008215 spermine metabolic process IEP Enrichment
BP GO:0008216 spermidine metabolic process IEP Enrichment
BP GO:0008295 spermidine biosynthetic process IEP Enrichment
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Enrichment
BP GO:0009309 amine biosynthetic process IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Enrichment
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
BP GO:0034311 diol metabolic process IEP Enrichment
BP GO:0034312 diol biosynthetic process IEP Enrichment
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Enrichment
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Enrichment
BP GO:0044106 cellular amine metabolic process IEP Enrichment
BP GO:0046146 tetrahydrobiopterin metabolic process IEP Enrichment
BP GO:0046165 alcohol biosynthetic process IEP Enrichment
BP GO:0046173 polyol biosynthetic process IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR000307 Ribosomal_S16 52 108
No external refs found!