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  5. Cz04g31320.t1

Cz04g31320.t1


Description : Retroviral aspartyl protease; Reverse transcriptase domain; Integrase zinc-binding domain; Reverse transcriptase, RNase H-like domain [Interproscan].


Gene families : OG_01_0000060 (OrthoFinder) Phylogenetic Tree(s): OG0000060_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz04g31320.t1
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
Cz02g03020.t1 No alias Reverse transcriptase/retrotransposon-derived protein,... 0.03 OrthoFinder
Cz15g16050.t1 No alias Retroviral aspartyl protease; Retrotransposon gag... 0.09 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006259 DNA metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
InterPro domains Description Start Stop
IPR000477 RT_dom 283 441
IPR041588 Integrase_H2C2 729 765
IPR041373 RT_RNaseH 532 634
No external refs found!